RNA id: TU127335


Basic Information

Item Value
RNA id TU127335
length 705
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G86020
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6440817 ~ 6441521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTACCGGTTTCTGGGTCTCGAGACGCTGaaccatcaacaaacaaaaccaaatctgcattgtcaaggggggtttcttttaaatctggtcgcggtgtgcacacctgttccaatgcggcgatacaattatgttcctcgccatcctgctcggtcgggagcagtgtggcaggattcaatactgtacaccgttttactgtgatgtttggcatttccaatagaatggtattatatctgagccatctggctgttgacaaatgagatgttttctgttccaacaggatcatagagacagcgtgtggcactagtaatgttacatcagaatatcccacaatttcccttgaagctaaaatagctttttctgctgctgctacagctctcagacaatttggtagacctgctgccacagggtcgagtttacttgaaaaatatgccaCCGGTCTCAGCTTTCCCCCGTGatcctgtaacagaacagaagacatgaaaccatttttctcatcaactgtttgtacaaatttctctcagggtctggaagtcccagacttggggatgtctgtaacaacattttcaacctttcaaatgctttctctgcttcaggagTCCAGGTCAGTTTGTCATGTGGCTGCAACCTTTTTCCGTGAGCCAAAGCGCTCAAAGGTGACTCTTCAATGGCAtagttgggaataaatgttctacaatatgaacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127332 lncRNA downstream 1483 6438900 ~ 6439334 (-) True G86017
TU127263 lncRNA downstream 342950 6097060 ~ 6097867 (-) True G85966
TU127230 lncRNA downstream 390167 6050200 ~ 6050650 (-) True G85939
TU127226 lncRNA downstream 407048 6033481 ~ 6033769 (-) True G85935
TU127225 lncRNA downstream 410793 6029733 ~ 6030024 (-) True G85934
TU127339 lncRNA upstream 1297 6442818 ~ 6443073 (-) True G86024
TU127341 lncRNA upstream 1807 6443328 ~ 6443697 (-) True G86026
TU127345 lncRNA upstream 80305 6521826 ~ 6522579 (-) True G86030
TU127347 lncRNA upstream 81392 6522913 ~ 6523657 (-) True G86032
TU127371 lncRNA upstream 227406 6668927 ~ 6669464 (-) True G86048
XM_043253679.1 mRNA downstream 160469 6197482 ~ 6280348 (-) False LOC122355417
XM_043253937.1 mRNA upstream 729875 7171396 ~ 7173368 (-) True hexim1
XM_043253936.1 mRNA upstream 733097 7174618 ~ 7182834 (-) False acbd4
XM_043253935.1 mRNA upstream 733097 7174618 ~ 7182834 (-) False acbd4
XM_043253933.1 mRNA upstream 733097 7174618 ~ 7182834 (-) False acbd4
XM_043253934.1 mRNA upstream 733097 7174618 ~ 7182834 (-) True acbd4
XR_006252215.1 other downstream 367385 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 386464 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 433710 5990913 ~ 6007107 (-) True G85930
TU127203 other downstream 453037 5984989 ~ 5987780 (-) True G85925
TU127053 other downstream 1014690 5423084 ~ 5426127 (-) True lsm5
TU127372 other upstream 228798 6670319 ~ 6671247 (-) True G86049
TU127438 other upstream 662359 7103880 ~ 7104218 (-) True G86108
TU127575 other upstream 946715 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 1906641 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 2076714 8518235 ~ 8518365 (-) True LOC122355888

Expression Profile