RNA id: TU127354


Basic Information

Item Value
RNA id TU127354
length 232
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G86037
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6569223 ~ 6569454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggaagcacagtaatctcgacagaagaatctgtcgaccaattgtctaggacattggtttgtcgacaaaattgttctaagcgcgcagagtatgaatggtatgaatgtgttgtatgaatgtcattgtgaatcactaggatttacggtgaataaggtggttgttgtggtttaggaataacacgaCTGATATTTCTCCCTACTAGAAAGGGAGTTgtgttattcaaacataaaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127348 lncRNA upstream 44833 6523960 ~ 6524390 (+) True G86033
XR_006252162.1 lncRNA upstream 233194 6330337 ~ 6336029 (+) True LOC122355060
TU127269 lncRNA upstream 450710 6101162 ~ 6118513 (+) False G85971
TU127270 lncRNA upstream 450710 6101162 ~ 6118513 (+) True G85971
TU127264 lncRNA upstream 470889 6098128 ~ 6098334 (+) True G85967
TU127355 lncRNA downstream 259 6569713 ~ 6569968 (+) True G86038
TU127360 lncRNA downstream 4460 6573914 ~ 6574126 (+) True G86043
TU127362 lncRNA downstream 99470 6668924 ~ 6669449 (+) True G86045
TU127369 lncRNA downstream 100860 6670314 ~ 6671256 (+) False G86046
TU127366 lncRNA downstream 100867 6670321 ~ 6671256 (+) False G86046
XM_043253015.1 mRNA upstream 177392 6324493 ~ 6391831 (+) True LOC122355059
XM_043253407.1 mRNA upstream 615737 5886952 ~ 5953486 (+) True becn1
XM_043253408.1 mRNA upstream 615737 5886952 ~ 5953486 (+) False becn1
XM_043253410.1 mRNA upstream 615737 5899838 ~ 5953486 (+) False becn1
XM_043253648.1 mRNA upstream 705933 5840203 ~ 5863290 (+) True med1
XM_043253421.1 mRNA downstream 12134 6581588 ~ 6583943 (+) True LOC122355310
XM_043253999.1 mRNA downstream 230331 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 230332 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 230332 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA downstream 230332 6799786 ~ 6961982 (+) False plxdc1
TU127344 other upstream 46652 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 127697 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 352656 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 472491 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 625643 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 733684 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 738470 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 1246369 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 2135806 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 2266994 8836448 ~ 8852449 (+) False arsg

Expression Profile