RNA id: TU127369



Basic Information


Item Value
RNA id TU127369
length 943
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G86046
representative False

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6670314 ~ 6671334 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGACCAGAGAACCAGTTAGATGAGAGCAGTTCATTTATTGTCCTTCCTCTAGAAGCAATGTCTGCTGGATTTTCATCCGTTGGGACATACAGCCATTGTTCAGGTTCTGTACTTTGACGTATTTTTTGAACTCTATTGGCTACAAACGTGTGAAAACGACGAGCGTCATTATTTATGTAACCCAAAACCACCTTTGAGTCAGTCCAAAAGAATTCGTCAACATTAGTGAGGTTAAGCTCTTCTCTGAGCATATTGCTCATCCTGACTGATACCACAGCTGCCGTTAACTCTAGTCTCGGTATAGTAATGATCTTTGAAGGAGAGACCCGGGCTTTGCCAATGAGAAAAGTGCAATGAATTTCATCATTCTCATTTATCATTCTCAGATAGGAACACTGACCGTAACCACAGGTACTTGCATCAGAGAAATGATGCATTTCGGTTTTCACAATCTTGCCGAATTCAGATGGTACATAACATCGTGGTATATTCACATTTCCCAAATTGACGAAGTCATTCTGCCATCTCTCCCACCGTGGGCTGAGAGCAGGGGAGAGCGGATCATCCCAGCCTGTACCTTGGCGACACATTTCTTGCAAAATCCTCTTGCCATTCAGAACGTACGGAGCTACAAAGCCCAAAGGATCATATATGGACGCAACAGTAGACAGTATACCACGGCGTGTTGTAGGTTGACCCTTTAGTGGTATATGAAATTTAAAGCTGTCACTCTGTATGTTCCAATGGATGCCCAAAGCTCTTTCAAGCGGCATGTCATTGAAGGTGAGATCTTTTGTTTCAAAGTTTACAGCGCATTCTGATGCTGGTATATTCTGCAAAACAGTGTTGTTGTTTGATACAAACTTATGAAGTCTAAGACCACCCTTTGCACACAGCTCCCGTGCTTCCTTTGTCAACTGAATGGCCTCTTCTACTGTCTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127362 lncRNA upstream 865 6668924 ~ 6669449 (+) True G86045
TU127360 lncRNA upstream 96188 6573914 ~ 6574126 (+) True G86043
TU127355 lncRNA upstream 100346 6569713 ~ 6569968 (+) True G86038
TU127354 lncRNA upstream 100860 6569223 ~ 6569454 (+) True G86037
TU127348 lncRNA upstream 145924 6523960 ~ 6524390 (+) True G86033
TU127370 lncRNA downstream 2084 6673340 ~ 6674070 (+) True G86047
TU127425 lncRNA downstream 336571 7007827 ~ 7009178 (+) True G86095
TU127427 lncRNA downstream 339932 7011188 ~ 7011412 (+) True G86097
TU127436 lncRNA downstream 423743 7094999 ~ 7095310 (+) True G86106
TU127446 lncRNA downstream 458354 7129610 ~ 7172983 (+) False G86110
XM_043253421.1 mRNA upstream 86371 6581588 ~ 6583943 (+) True LOC122355310
XM_043253015.1 mRNA upstream 278483 6324493 ~ 6391831 (+) True LOC122355059
XM_043253407.1 mRNA upstream 716828 5886952 ~ 5953486 (+) True becn1
XM_043253999.1 mRNA downstream 128529 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 128530 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 128530 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA downstream 128530 6799786 ~ 6961982 (+) False plxdc1
XM_043254397.1 mRNA downstream 512174 7183430 ~ 7219444 (+) True plcd3b
TU127344 other upstream 147743 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 228788 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 453747 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 573582 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 726734 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 631882 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 636668 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 1144567 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 2034004 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 2165192 8836448 ~ 8852449 (+) False arsg

Expression Profile