RNA id: TU127370


Basic Information

Item Value
RNA id TU127370
length 731
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G86047
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6673340 ~ 6674070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTTTGGATTGTATTTTCGGCCACTTGGAAAGTTTATCCCGAAACGCTCTTTGAATGACAAAGGGTTGGCCGTATCTTTGGTTTAGTTTGTCCCAAGCATCTTTATAGGCTTCTTCGTCATTTCGAAAAAAGGTGCCCTCAAGATATTTGTGTGCTGAGCCACtcacatacttttttaaataatagagtTTATCAGCTGCTGGGATGCCCTTTCTATCTATTAATGACATAAATGACGCTTTCCAGTTTACAAACTGAATTGGGTCTCCGCTGAACACTGCGGGTTCAGGTATGGGTAACCTGTTAATGGCTATACTGTCCTGAACTGCTTGAGCAAGATGAGTTACTTCACTGAGAGGTGTTGACTGTACAACATTGCTTTGCTGatgtaacattttgtttctCTGCTCTTCTTGTTTATTCTGTGTTGACTCACTTCTtgtctcttgttttatttcttcatcataGGATTTTACTCTGGCACGAGCAACTTCAATATCCTTTTCCACCTGCAGCCGTTCTAGCTCAAACTTTTGAGTTTCTAACTCTCTTCTGAGTTGCTCTTCTAAGGTTCTTATTCTTTCCTTTTGTTGTCTTTCCGTTTCCATCATCTTGTATTCAACCTCTTTTGCAGCCAGCTCTGCTGCAGCATCTGCACGTTTGCTTGCAGAACAAGAAGATCCAGAGTGCATGCTGACACTCATTTTTGAAGCAGTTGAACCATATATA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127368 lncRNA upstream 2006 6670321 ~ 6671334 (+) True G86046
TU127369 lncRNA upstream 2084 6670314 ~ 6671256 (+) False G86046
TU127366 lncRNA upstream 2084 6670321 ~ 6671256 (+) False G86046
TU127362 lncRNA upstream 3891 6668924 ~ 6669449 (+) True G86045
TU127360 lncRNA upstream 99214 6573914 ~ 6574126 (+) True G86043
TU127425 lncRNA downstream 333757 7007827 ~ 7009178 (+) True G86095
TU127427 lncRNA downstream 337118 7011188 ~ 7011412 (+) True G86097
TU127436 lncRNA downstream 420929 7094999 ~ 7095310 (+) True G86106
TU127446 lncRNA downstream 455540 7129610 ~ 7172983 (+) False G86110
TU127443 lncRNA downstream 497327 7171397 ~ 7173329 (+) True G86110
XM_043253421.1 mRNA upstream 89397 6581588 ~ 6583943 (+) True LOC122355310
XM_043253015.1 mRNA upstream 281509 6324493 ~ 6391831 (+) True LOC122355059
XM_043253407.1 mRNA upstream 719854 5886952 ~ 5953486 (+) True becn1
XM_043253999.1 mRNA downstream 125715 6799785 ~ 6935072 (+) False plxdc1
XM_043253996.1 mRNA downstream 125716 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA downstream 125716 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA downstream 125716 6799786 ~ 6961982 (+) False plxdc1
XM_043254397.1 mRNA downstream 509360 7183430 ~ 7219444 (+) True plcd3b
TU127344 other upstream 150769 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 231814 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 456773 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 576608 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 729760 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 629068 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 633854 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 1141753 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 2031190 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 2162378 8836448 ~ 8852449 (+) False arsg

Expression Profile