RNA id: TU127425


Basic Information

Item Value
RNA id TU127425
length 609
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G86095
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7007827 ~ 7009178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGGGTAGCTGTGTGTTAGCAAGGAGTCAAAACCAGGACAAAATTTTGGAGGTTTGTCTAAAAGGAAAAAGCGTCGGAGCACACTTCACCGAAGATCCGGAGTCGTGTTATAGAACGAAGTTACGTCGGCTAACCACTTGCCCTTTTGTCTGGGAAGTTGCCACGAGGTCCATCATCGTCGCGTTACACCTTGATATACCCGGAGCAACGgtcaggttttttttttgtaggacgGATGTTGTCCAGAACCAACATCTCCAGTGATTCCGATGGCGAGCCAAGTCCACTGAGGAAAGTCCAGCACCGATTTCCCTATCCACCTGCACATAATACTTACCTTACAAGTATCTTTGGAGCAAGGTGAACTGCACAACCTCTACAGCAAATGCACTGgaaccaattttttttatttttgtttagggCCCAACGgacattctttttattttctagtgTGCACactactacttttatttttgtaacttttgggatttatttcacattttgtacaAACTGTCAAGTGTAAACAATATAAGAGTGGCTACTCAACTGTACTCTTGTGTCTGTCTCATTTTTGATGCTCAATACCGTGGCTCCTGTCGAATTTGGTA

Function

GO: NA

KEGG:

id description
ko04530 Tight junction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127370 lncRNA upstream 333757 6673340 ~ 6674070 (+) True G86047
TU127368 lncRNA upstream 336493 6670321 ~ 6671334 (+) True G86046
TU127369 lncRNA upstream 336571 6670314 ~ 6671256 (+) False G86046
TU127366 lncRNA upstream 336571 6670321 ~ 6671256 (+) False G86046
TU127362 lncRNA upstream 338378 6668924 ~ 6669449 (+) True G86045
TU127427 lncRNA downstream 2010 7011188 ~ 7011412 (+) True G86097
TU127436 lncRNA downstream 85821 7094999 ~ 7095310 (+) True G86106
TU127446 lncRNA downstream 120432 7129610 ~ 7172983 (+) False G86110
TU127443 lncRNA downstream 162219 7171397 ~ 7173329 (+) True G86110
TU127475 lncRNA downstream 212350 7221528 ~ 7221955 (+) True G86131
XM_043253996.1 mRNA upstream 45843 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA upstream 45844 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA upstream 45845 6799786 ~ 6961982 (+) False plxdc1
XM_043253999.1 mRNA upstream 72755 6799785 ~ 6935072 (+) False plxdc1
XM_043253421.1 mRNA upstream 423884 6581588 ~ 6583943 (+) True LOC122355310
XM_043254397.1 mRNA downstream 174252 7183430 ~ 7219444 (+) True plcd3b
XM_043253236.1 mRNA downstream 216684 7225862 ~ 7233649 (+) True nmt1b
XM_043253238.1 mRNA downstream 216684 7225862 ~ 7233649 (+) False nmt1b
XM_043253237.1 mRNA downstream 216684 7225862 ~ 7231095 (+) False nmt1b
XM_043253239.1 mRNA downstream 216684 7225862 ~ 7231095 (+) False nmt1b
TU127344 other upstream 485256 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 566301 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 791260 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 911095 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 1064247 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 293960 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 298746 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 806645 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1696082 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1827270 8836448 ~ 8852449 (+) False arsg

Expression Profile