RNA id: TU127485


Basic Information

Item Value
RNA id TU127485
length 352
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G86141
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7297683 ~ 7298034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAAGATGCATAATTACGtgtacacatataaacacaagaTTTCCAGTGTCaaatttaaatgtcacattCACTTGCTAATCTATAATATGAGAATTATCATTATACATGGCTACTCCTTTATCATTGCATAACCCTAcacgttttttttctaatatttaaccTAAATAGTCTAAATATTAAACCTTGTAGAATAACAATttttgtcatcatcatcatcatgacaTGACCGTTTTCTCTGTGTCATTGCCTAGTCCTGTTTTCCCCATGTTTTAGTCTCCTGTGTTCTGACCCAGCCTGTGTACCTAAGATTTGCCTCTTTGGACATTGTTTTGACTCTGTTTGGACAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127484 lncRNA upstream 140 7297318 ~ 7297543 (+) True G86140
TU127475 lncRNA upstream 75728 7221528 ~ 7221955 (+) True G86131
TU127443 lncRNA upstream 124354 7171397 ~ 7173329 (+) True G86110
TU127446 lncRNA upstream 124700 7129610 ~ 7172983 (+) False G86110
TU127436 lncRNA upstream 202373 7094999 ~ 7095310 (+) True G86106
TU127489 lncRNA downstream 5104 7303138 ~ 7304848 (+) False G86142
TU127490 lncRNA downstream 5104 7303138 ~ 7304848 (+) True G86142
TU127492 lncRNA downstream 5104 7303138 ~ 7304848 (+) False G86142
TU127494 lncRNA downstream 5104 7303138 ~ 7304848 (+) False G86142
TU127496 lncRNA downstream 5104 7303138 ~ 7304848 (+) False G86142
XM_043253235.1 mRNA upstream 5543 7233943 ~ 7292140 (+) True svild
XM_043253234.1 mRNA upstream 13239 7233938 ~ 7284444 (+) False svild
XM_043253238.1 mRNA upstream 64034 7225862 ~ 7233649 (+) False nmt1b
XM_043254021.1 mRNA downstream 68300 7366334 ~ 7374805 (+) False znf281b
XM_043254020.1 mRNA downstream 68301 7366335 ~ 7374805 (+) True znf281b
XM_043254374.1 mRNA downstream 80893 7378927 ~ 7385963 (+) True muc13b
XM_043253219.1 mRNA downstream 105518 7403552 ~ 7472715 (+) True lrp2b
XM_043254401.1 mRNA downstream 175689 7473723 ~ 7486698 (+) False mpp3b
TU127344 other upstream 775112 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 856157 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1081116 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 1200951 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 1354103 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 5104 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 9890 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 517789 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1407226 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1538414 8836448 ~ 8852449 (+) False arsg

Expression Profile