RNA id: TU127497


Basic Information

Item Value
RNA id TU127497
length 761
RNA type TUCP
GC content 0.61
exon number 2
gene id G86142
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7303138 ~ 7304848 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgacgagtcggctgcccctcctctttattgtcaccatcaccccgtcctttattcgccgcccttcaccaggctcccgacgggagtgggtgtgttcgagaggaggggcgtggtatcggccaggtctggcggcgtgtgacgaggcacacctgaaggggatttagccttgtcaccgccgccgttaaatgccctgcgcgcctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgtgaaggagctcgtcccgccgctagacaagcgcgtcgtgggaccccgtacagtccaggcgacgactgcacccggatacggctgacgggccaggatgccgagccgttaaatcccctaaatctctgacgaccggaggaaagaagcgacggagatgccgcggaagaagccgccgcccctcgcgcccccgaacaggagaggggagcgcgtgcgaccgccggactccgccccttacctggaccctgcccccctggaacactacctgaccttccacaatcccagaagcacaacgagggcaccagtttccccttttctggaccctgcccccctggaacactacctgaccttccacaatcccagaagcacaacgagggcaccagtttccccttttatttggacacttttccccttggacactttattttgtactatttttgttaataaaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgttggctcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127485 lncRNA upstream 5104 7297683 ~ 7298034 (+) True G86141
TU127484 lncRNA upstream 5595 7297318 ~ 7297543 (+) True G86140
TU127475 lncRNA upstream 81183 7221528 ~ 7221955 (+) True G86131
TU127443 lncRNA upstream 129809 7171397 ~ 7173329 (+) True G86110
TU127446 lncRNA upstream 130155 7129610 ~ 7172983 (+) False G86110
XR_006252184.1 lncRNA downstream 12652 7317500 ~ 7319591 (+) True LOC122355189
TU127574 lncRNA downstream 82820 7387668 ~ 7388981 (+) True G86202
TU127593 lncRNA downstream 197730 7502578 ~ 7504499 (+) True G86219
TU127680 lncRNA downstream 396495 7701343 ~ 7701799 (+) True G86275
TU127689 lncRNA downstream 414136 7718984 ~ 7719283 (+) True G86283
XM_043253235.1 mRNA upstream 10998 7233943 ~ 7292140 (+) True svild
XM_043253234.1 mRNA upstream 18694 7233938 ~ 7284444 (+) False svild
XM_043253236.1 mRNA upstream 69489 7225862 ~ 7233649 (+) True nmt1b
XM_043253238.1 mRNA upstream 69489 7225862 ~ 7233649 (+) False nmt1b
XM_043253237.1 mRNA upstream 72043 7225862 ~ 7231095 (+) False nmt1b
XM_043254021.1 mRNA downstream 61486 7366334 ~ 7374805 (+) False znf281b
XM_043254020.1 mRNA downstream 61487 7366335 ~ 7374805 (+) True znf281b
XM_043254374.1 mRNA downstream 74079 7378927 ~ 7385963 (+) True muc13b
XM_043253219.1 mRNA downstream 98704 7403552 ~ 7472715 (+) True lrp2b
XM_043254401.1 mRNA downstream 168875 7473723 ~ 7486698 (+) False mpp3b
TU127344 other upstream 780567 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 861612 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1086571 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 1206406 6095948 ~ 6096732 (+) True G85962
XR_006252205.1 other upstream 1349826 5886952 ~ 5953312 (+) False becn1
TU127500 other downstream 3076 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 510975 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1400412 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1531600 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 2452425 9757273 ~ 9759461 (+) False LOC122355274

Expression Profile