RNA id: TU127548


Basic Information

Item Value
RNA id TU127548
length 2025
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G86184
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7283886 ~ 7285998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTCTCACTGTCCCAGCGGATCTTAGCTGAGCCAGTACATTCTGTATCTTCTGGCTGCTGTCCTTGCCACAGGTACACCTCCATCCTGTTATCCACCAAGAACAAGGCTACAGAGaataagagagaaagacaaagaatataaaatgttgacattttacaAAGTGTGGCACATATAATACAGTATCACTGTCAATTCAAATGATAAGAATCCATGATTATAATCACATGTAATAACATATACCAGGCTGAGGGGCTGAATACAAGTTCTCCTGAAGGAATGGCATGGCCATTGCAGTTCCTATCATTTGGGCGGGCCCATACTGCTCCTCTGCCTGAAAAGTCCCACCGCAGGCGCTCAGACGGAAAAGACGTGGTGTGAAATTATACTTACCTGGATCTGCAAACAAACAATGacaattataacaattatttgtaaatagagctgattcagatcattttatctgtttttttactTCCAGCCTTTAAAGacaatgattaaatacaaaattaatatgaGCTGTTTAGATTGATGTGGTTTGTAATTGGTAAAATGTgctggaaaagaagaaaaatggaTCAGAATATCAACTTGCAGTGCATGCATAACTATTTTGCTGtattaattactgtaaaaaaacaaaaaaaaaaaaacaaggtctAACAACGATGCACTTTATCGACGTATCAACGTTTTTAAATCGGTGGTTAGTCtagtatataaattaatatacaaataatagaaaaatggcCATTTGTAAGGCACAATGTCATTTGCCTACAAAGCCTACTAAGAGCATGCATAAAGCTTGCCACATTACACTACCAGAAGCTATGATTATAAATGTGTCAAGGAAAAATAGTAAGGAGgctacattaacattttaaaaaattcactGATAAACAAGTGCACCATATTAGTGATGCGCCTGTGTGCATGTTTCACAAGATTTACATAATCtgagaatatttgtttttgatttgaattggttaatttaaaagtaaacattccactctctataaatatatttcttatacacAGAGTTTTGTCCCCAAGTTCACAGTCCGAGATGACAAAAAGCACTtcttgtttactttatttttaaaaaaattacattttgttgttattgtgagtGAACACAAATAAACCGAgtctttaaagatttaatatatgtattattcttATCTGTTTGAGCAAAAATTACTGGTGTACCGTTGCTGTTCAGCTTCAGATAAGTCATATTTGTGCTGGATGAAAAATAGGTGAGTGACTAAGCGACTAATGACATTTTGGTTGACTAACAGTTAGTCGACTATTAAGGAACAGCCCTattagaaataaacattttcttttgtacCTTGTAGCATGCAATCATATGATTTCCTGTCCTGCTTGCCAAGAGCGTCCCAGAATTCCTTGGGCTCAGTTCCTTCCTCTATCTCATGCACTTTCAAACTGCTGTTACTGTTCAAACCCAGCTCACAAGCTCACATTTGAGTGAGGCGCTCCACGGTCCTCTTGCCCACTTTCTGGGCACCTGGATGAGACTTACAGCCATGCCATAAGTAAAGTTGTCCCTTCTGTACCCCAAGCAGAATCAAACTAGCACGAGAGCGCAGGCTGGCACAACAGCACTCTACTTCAACCAGTGAGCCTTCCATCTCTGTCTCTCCACGCACACAGAATAAATGCCAGTCtcctgccaaaaaaaaacaaaaaacatattaaatgtcacataaacaattcttattgttttcttcatttattaccCGTGTTTTTGGAGCTATCATCCCTGGAGCCCCGGTGGATGACTAGCCCTCCCTGGAAGAGTTGGAGGAAGCAGGGAGGTTCTTTTCCCTGTGTAACCAGCACTTGCGCCCCCCTGTGGTTGCCAAGCTCTACTGTCATGAGGGCAGATGTGCCACGCCCACTGACACTAGAGTGACGTCCCTGCCAAAAGAAGCATGCTGTGCGTTCCCTGCCTGGACCAGCTGTACTCATTTCACCAGGCTTTTGTCTCTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127428 lncRNA downstream 272456 7011203 ~ 7011430 (-) True G86098
TU127426 lncRNA downstream 274773 7007826 ~ 7009113 (-) True G86096
TU127422 lncRNA downstream 280955 7002260 ~ 7002931 (-) True G86094
XR_006252235.1 lncRNA downstream 281737 7001006 ~ 7002149 (-) False LOC122355669
XR_006252236.1 lncRNA downstream 281743 7001006 ~ 7002143 (-) True LOC122355669
TU127551 lncRNA upstream 412 7286410 ~ 7287752 (-) True G86185
TU127556 lncRNA upstream 3172 7289170 ~ 7290516 (-) True G86187
TU127554 lncRNA upstream 4730 7290728 ~ 7292120 (-) True G86186
TU127557 lncRNA upstream 11802 7297800 ~ 7298146 (-) True G86188
TU127545 lncRNA upstream 17136 7303134 ~ 7304848 (-) True G86183
XM_043253936.1 mRNA downstream 101052 7174618 ~ 7182834 (-) False acbd4
XM_043253935.1 mRNA downstream 101052 7174618 ~ 7182834 (-) False acbd4
XM_043253933.1 mRNA downstream 101052 7174618 ~ 7182834 (-) False acbd4
XM_043253934.1 mRNA downstream 101052 7174618 ~ 7182834 (-) True acbd4
XM_043253937.1 mRNA downstream 110518 7171396 ~ 7173368 (-) True hexim1
XM_043254022.1 mRNA upstream 73385 7359383 ~ 7365015 (-) True kcnj19b
XM_043254313.1 mRNA upstream 218718 7504716 ~ 7521406 (-) True hectd2
XM_043254236.1 mRNA upstream 241078 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 241078 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 266134 7552132 ~ 7554852 (-) True rpp30
TU127438 other downstream 179668 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 612639 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1210454 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1229533 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 1276779 5990913 ~ 6007107 (-) True G85930
TU127575 other upstream 102238 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 1062164 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 1232237 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 1232982 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1324554 8610552 ~ 8612445 (-) True G86783

Expression Profile