RNA id: TU127551


Basic Information

Item Value
RNA id TU127551
length 1343
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G86185
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7286410 ~ 7287752 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGGATGGAGATTTACTGCTGATCACAGAACTGTGCTTCACTGAACATGGACTTACTGTAGATTCTGCCTCATCGTGAGTgcaattttaacaatttatcaTGCAGgtaaagtcaagtcaagtggctttttattgtcattccaactacatatagctgtgcagtacatagtgaaatgagccAATGTTTCTCtgggacctggtgctacatagtcataaatataaaaaaaaaaaaaacctcacatactgagctaagacagtgtcttagccacattaAGTGCAAAGTGtacagactagtgcaaacagcaagggagtaAAGTGCAAAACCCATTGTgtaaactagtgcaaacagtgcaaggacaaaaacacaaaataaaagacaataaatacGAAGTGCAAAGAATGCATATGGAAGAGAAAGTCTATTCAGGTGTGATTactgaggagtctgatggcttgtgggaagaaacagcggttcagcagtctggttgtgaggtCCCGAATGCTCCGGTTcctctttccagatggcaggagggtaaataatgtgtgtgagggatgtgtggggtcctgtactatattgtgggctttgcggatgcagcgtgtggtgtaaatgtctgtgatagagggcagagagacgccaatgatcttttcagctgtcctcactatcctctGGAGGGTCTTGCAatccgatacggtgcaattcccaaaccaggcagtgatgcagctaCACAGTACGCTGTCAATGGTCCCTAAAGTCTATGAGTAATTCAagataacagcaaaaaaaaacaaaaaaaaaacacgctgCACCTAGATTTCAGAAGCTGGGGCACTTGTGGCATCTGCTGTTGCTATACAACCATGACATCCAGAAGATTCTGAAGTTTCAGCAAAGGATAAATGAATTTGCACTAAAAAACACTTCCAGTAGCTCAActactaaatgtatttaaaaatggctATCCTTGTACAGCTATGATCAGCTGTTCCTTCATCTTGGCTGAGCTTTCAATGTTGTTATGGGAAAGGATGAAGCTAATTGGTTGGTTCTTGTCACATTGCCCACAGTGCGCTTGCTGGAttcaaaaaatggaaatgtttttatcttgatgcgtaaaaaaagtaattccaTTATGCTGTGCAACTACATTTGACAAGAACTTGAGCATGCTAAAGACACAATATGTGTTACTTCTCTGTACTCTTATTAAGTTATGGGTGAGGTACTGTACCTGCACTTTAATAGCCAGGTCTTTCTCCCAATAAGGGAAGATGTTGGTAAAGGTGAGTGGTTCTGCACCAGCCAGGATCAGGTATGCCTGAGGAGGCCGTCTAGAGTTCttct

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127548 lncRNA downstream 412 7283886 ~ 7285998 (-) True G86184
TU127428 lncRNA downstream 274980 7011203 ~ 7011430 (-) True G86098
TU127426 lncRNA downstream 277297 7007826 ~ 7009113 (-) True G86096
TU127422 lncRNA downstream 283479 7002260 ~ 7002931 (-) True G86094
XR_006252235.1 lncRNA downstream 284261 7001006 ~ 7002149 (-) False LOC122355669
TU127556 lncRNA upstream 1418 7289170 ~ 7290516 (-) True G86187
TU127554 lncRNA upstream 2976 7290728 ~ 7292120 (-) True G86186
TU127557 lncRNA upstream 10048 7297800 ~ 7298146 (-) True G86188
TU127545 lncRNA upstream 15382 7303134 ~ 7304848 (-) True G86183
TU127546 lncRNA upstream 15382 7303134 ~ 7304848 (-) False G86183
XM_043253936.1 mRNA downstream 103576 7174618 ~ 7182834 (-) False acbd4
XM_043253935.1 mRNA downstream 103576 7174618 ~ 7182834 (-) False acbd4
XM_043253933.1 mRNA downstream 103576 7174618 ~ 7182834 (-) False acbd4
XM_043253934.1 mRNA downstream 103576 7174618 ~ 7182834 (-) True acbd4
XM_043253937.1 mRNA downstream 113042 7171396 ~ 7173368 (-) True hexim1
XM_043254022.1 mRNA upstream 71631 7359383 ~ 7365015 (-) True kcnj19b
XM_043254313.1 mRNA upstream 216964 7504716 ~ 7521406 (-) True hectd2
XM_043254236.1 mRNA upstream 239324 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 239324 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 264380 7552132 ~ 7554852 (-) True rpp30
TU127438 other downstream 182192 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 615163 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1212978 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1232057 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 1279303 5990913 ~ 6007107 (-) True G85930
TU127575 other upstream 100484 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 1060410 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 1230483 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 1231228 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1322800 8610552 ~ 8612445 (-) True G86783

Expression Profile