RNA id: TU127572


Basic Information

Item Value
RNA id TU127572
length 5032
lncRNA type inter_gene
GC content 0.32
exon number 6
gene id G86201
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7380107 ~ 7385983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgaaaaaatacaaataactttgaaaatgaaaaattaaatgtttattggctatttaaaaaaaatactgcttttAATATCTTAAAAAGATAATTCGTACATTTGCCGTAGTTATGACATTATACATCAAATCTCATAGTCACAGTTGAAACAGTTAATCATCATTTCTCTCCCTGAATAAGTTATGTTAATGCTTAAGtatctcaaaataaatgataaaagatttatttatattgtgtatacCAGAGTACCAGCCCAACCATTTACAATACTAGAACcaaacaaaacccaaaaatatgtcataaaaaatgttttgttgaaataaaagattttaaggTTATAAGATATAAATGTAGAATAGGAGTCCCATGCAAAGCAGCTTCCATTCAACGGTTCAGGAAAGACTTAGATCAAGGAGAAAGCCCATGAGCTGAATTTCATTAGTTGCTAATGCCACAGAACGGAAATATAGAGTCAATTTGAGTTCTGTTCTATAGTAAGATGTACATAAAAAGGCAACAGCtgtgttttgtaaaaattttggccaacaaagaaataaaaaatcattacacataaagatgaataaaaatcatcTGCATCCAATTGTCCTGGTTAAGTGAAGCTAATATCTGGGCATTCTGTTGTCATCTTGTCGAAAATATGGGTTGTTGATACCATTTTCCACTCTTCTTCCACCATAACCAGAGTATGCTGGAACTTGACCCTTCGAGCTCATGTCCTCATTATACTCACTGTAACGctaTGCTTTGCTTCCTGGGCGATCTTTAATAACCAGTGCCTGATTGCTTCCACTGTCGGTCATCTCTAGATTGTTAGAGTTCCAGCTGGCATCAGGGTTGGCTCGAGGAATCCTGAGAACTCCATTAGGTTTATGTACTGGCTTAGTTCCATAGGTTGAGCTAAAGTCTACCTCAGATGAGGAGCTTCCCTTTTTATTCTTAGAGCTGTAGAAGGATGcacagaaatttttttttagcttgttaTGATAACACTTTGTAGTAACTTTTATTACTAAGTGATTAACAAACCTTATATAATACTTAACAGATCATTAGTTAATATATATTGCACAATTAGAAGCATGAAATAATATGCTTGTTAACGTTTACCAATATactaaacattatttaacagATAATTTTCTGAAACTATAAACTGAAATGCCTACAAATGTCATTAAACTTTCAATTCATATAATCATGCATTCtcaaaaaactacaaatgctgtaaaaataggCTATAGTTTACAATGCATCACCTGTGTTCTACTATTttcacatcttaaaaaaaaaaaaaaaaacattcattatataCCCTCAGacatttactatttactattttacaGACTTGAGATAGTCACCACTGATAAGCTTTTACTAAATATAATGTAGTCTCTTGAACTTTCTGTAAAGCTGTTTTACGGTGTTTGCATTGtgaaaaatgctataaaaaataaacttaaattaagTTGAAGTTTAAAAGAATCTATTCTGGAAACTATTTGgtaattgaaaacatttctaaacatttacTAATCGTTAGCATCTTTATTGCCTCAACACTTTCACAAGTATGCTATTGCAtaccattaaatatattaaatacattaaaaatacattaatcaaacaacataaTATAAACCAGATTGGACCATGTTTCCTTATAGTTGTAAACTGACCTCATAACCagcccttaaacctacccataccactaGACTTGTCTTGACTAGACCTAATCTTACCCATATCACACCttaatagcagcaaaagtgttgtGCTGTaacaaaagattttaataattgcataaCTTATGTTAAAATCAGATTTTCAAGATGTGCATGATCATATGCATTAATAGTTCAAGGagatttataaatacattaacatataTGAACCAATTATCTGTTAATCATTATGTAATGTTTAAGACGTTTATTAGTAAGCAAACAAGCACGTTATCTGTTTTAGCTATTTCAGTATATATTAGCAATAACCATGTTAATCTATTATCTATATCTAATCTATTAAgcattatataatgtttgttaATGGTTTATGAGTGTTATTATAGTGATACCATATGTTGCATTGGAAAAAATGTGCAGTAGATTCTCACCTTAAGCTTATAGCAAAGGCCACAATAAAGATGATCAGTAATGCACCCAACACAGTGGACACCACAGTCACAACCAAAAGATATGCTACAAATAAGAATTTAAATTACAAAGAGATGCAAAAATGTTCCTCAACAAACAATTCAGATGATTGTGGAGGGATGACTTACGATCACTGCAGTTGAACCCAGCAAAGCCAAATCCACACCTGAAATTAGCAAAAGAGGTCTTAGTGATACTGTGCAACCACAACAGCCAATTTTCACAttacgtttttttgttgttgttatatgcTTGTAAATGATGAATAAACCCAGCTGTTTATGTAAGGGGGTCTTTTCTATTGTGACATATACACTAACAAAAggattatttaaaagtttttaaatggtAAGATTTTTagtgttctaaaaaaaaatcaatactcGTTCTAATAGGCTGATTTGCTTTTCAGGAAACTTAGTTGCATCAGGTATTTTTACATTCACACAGCATGGTTatgtagcattttttaaataaaagttaaaggggtcatattaTGCAATTTCAAATTTTCCATTCTCTTTAGAGCTTTACAAGCTGTTAGTACATAGATAAGATCCTTAATGTTGCAAGGACTAAAGTCTTAAAACCAatgagatattctttataaaagttacttgTCCacataaagcaataaaaagtcGAAAATTGAACCTACTATAGTGATTTTTCGTCTTTTACAGAGGTGTGTCTGCTTGTTTTGTTGCCATTTCAGTACTTTTTAGTATTTAGATTTACAGAAGATAAATATTACCGCTCTGAAATCTACAATAACGCACATACTGTAAGAAACATGTAAAATTACtcatagaaataaatactttgtttaaaatttgaGTTAtctctaaatgtaaatgttaatagGTGTTTGCAATATTTGGCAGGATATTATGCTGACCAcagaaattattttcaaaataatctttgataaattgtgtaaaaaaaaaaaagttacttcaCATGACCATGTTGCTTCTACAGCTACAGACCATTGTTTGTTGAAGAAACATATACTAAAAATCAAGCATGACTGTCAAGTTCAgctgaaatactttttttagtgCTAAAGATAAGATTTTCATAGTGATGAATAGTGAACTCATGTCTCatattatcattatagttaAAAAATCATCATTGTAATGAATAGTGAATTCATGTTTCGTAATGTAtaatttactatttactattttacagtataatcaTTTCATAAGAATTAATTTGCACGTTTATACCATATCAAATCAAAGACTGTTATagtgaaaatacagaaacattttactaCTGTACTTTGGATtcaataaatgcaggcttggtgagcagaagagacttctttcgaCATTACAAATCTTACTGCTGAAAAAtgtttgactggtagtgtatttCTGAGCTAAACAGTTCCTTGAACAAGAAAAATGTAGGGCAGGATTTAACTTGATCACTGgattgttgttgtttgctttAGACCATCAGGTTAGattaaatttaatatgaattaaattaaggCTGTGAATATTTACAATCTTTACAATAGTATAAAGGTCCTAGATAATGTAATTTCGGTTAATGGATTTTTTATGAagtgtttctaataaaacatgtatttttatataaaatcatttttaaaaaatctgcaaaTGACATGTTACAGGTTGCTTACTTTGCACAGATTTCTGAATTCACTGCTTTTTCTCCATTTGGACAAGCTGTAATGAAGGTGCAATCAAGGCAGGCCTGAGATGTGGACTGTGACCTGATATATCCTTCTTTGCAAGTGCACATTGCAACACCGCTAACCTGTTCATTACATTCTGTGGTGTGACTGTCGCAAGTTCCAAGCTCACACACTGAGCTGtctgAATTCAGTGGCACccgttattttattttcaagaacTGCTTCCAAAATCTGAGATCGAACCTTGTCTTTTGTGATAGTGGATGTCAAGGCATAGAAATTCTGCACGTCTGCAATTACACTGCCTTGACTGTAAAGGTGGATGCAAACaaattatgttcatttttagcAAGCTACCATATTAAACTTCAGaacaattattacattattacattataacaaTGAACTATTATTTGCAACATACATCCTTcaataactaaatgaaaaattaagatTATGTCTTTGTAAGCAGGTATTAGGTAACAAAAAAGTTCATGTTAACGTTTAATGCAgggttttaaagaaaatactaGTATTGTAACAATTGTTACTTACCGTAGACTCAAAACGATGGAACGTATGTAGCCATTACCATTAAGAACTCCACTGAGCTGTATTTGGGATGAGAAtatagaaagcatttttatttatatcactcATCCTTTACTAAGTAGGAAAATGTACTAAGCTTCAGTCCTTtccaaaagaaaatacagtgtCTTACCTCATTCTGTATTCTGTTAGAAACAGTTAGAAAATCCTTAGAATTTGTATAAGCCATTTCTTGCTCAAACGTATCAGATAATCTTAAAGTACCAGGGAAGACCTTGGCTgTTTGAACACAGCCGCTCATTTGATCGTAAACCAGCCCAGCTCGGCATATGCAAACAAATGTGCCATCAAACCGTTCTTCACAGGTACTCTCTCCAATACAAGGACTTGAAGCACATGGACCGTGGAACAGTGGCAGGAATGTCTGTGGTACCAGGTGGGTCCGTGGTATCAGTCCCTGACCCCTCAGGACCTGGtaaaacaatgataaaatatCATTGATTAAGTTCCATATTAAACTATTGTGTGTATACTGTGCTGACATGAGTCTACAGAATTTGaacaataaataatgacatttttgattTGCACTTTCGTGTGAAGTGAcaatttaaagactttttattgCTA

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127570 lncRNA downstream 2912 7376898 ~ 7377195 (-) True G86199
TU127545 lncRNA downstream 75259 7303134 ~ 7304848 (-) True G86183
TU127546 lncRNA downstream 75259 7303134 ~ 7304848 (-) False G86183
TU127557 lncRNA downstream 81961 7297800 ~ 7298146 (-) True G86188
TU127554 lncRNA downstream 87987 7290728 ~ 7292120 (-) True G86186
TU127590 lncRNA upstream 83044 7469027 ~ 7476130 (-) True G86216
TU127584 lncRNA upstream 94072 7480055 ~ 7487075 (-) True G86210
TU127605 lncRNA upstream 116594 7502577 ~ 7504461 (-) True G86230
TU127609 lncRNA upstream 136681 7522664 ~ 7523001 (-) True G86232
TU127743 lncRNA upstream 202328 7588311 ~ 7590983 (-) True G86324
XM_043254022.1 mRNA downstream 15092 7359383 ~ 7365015 (-) True kcnj19b
XM_043253936.1 mRNA downstream 197273 7174618 ~ 7182834 (-) False acbd4
XM_043254313.1 mRNA upstream 118733 7504716 ~ 7521406 (-) True hectd2
XM_043254236.1 mRNA upstream 141093 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 141093 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 166149 7552132 ~ 7554852 (-) True rpp30
XM_043253276.1 mRNA upstream 187188 7573171 ~ 7578201 (-) True LOC122355224
TU127438 other downstream 275889 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 708860 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1306675 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1325754 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 1373000 5990913 ~ 6007107 (-) True G85930
TU127575 other upstream 2253 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 962179 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 1132252 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 1132997 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1224569 8610552 ~ 8612445 (-) True G86783

Expression Profile