RNA id: TU127584


Basic Information

Item Value
RNA id TU127584
length 6557
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G86210
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7480055 ~ 7487075 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAACTATTAGAAATGAACTCTACATGGTATTCTATGTGCTTATAAATGTTGGTATGATCTTGCTAATCCCTCTTATTAGTGGACAGACGATACCTTGAtgtctctgaaaaaaaaatattaaaaaaataataaaaggccTAATAAATCTTGTTTTTATGTGATGTTCTGCCAATTTAGTTTTAAAGGGTTTaaataaaagcactaaaaaGCCTGTTACTACCATCTGCTGCTGGGTAAATGTATTACCAGTCACCGAAAATTCAACAACATCACAAGATGACGTAATGCTCAAggatttgttgttttaaatattaaaagcaatatttatttgttactaAAATCtctcaaataaaagcaaaatctaaaagaaagggatacagtttgtaatttttattataacaattacattcaaaaatacTCCATGTACTCTAAAAGGGCACACATTCATAACATTTTGAACAGTACTATATGGCCATAAAGACGTTAACATGCTTTATGCTCTTTGACTATAATCATATAGAATTTGTCTAACGAACTACACAGACATCATCGGTTTGATACAAAAACGCTGACAATTACAACTAAATTATGACAGGCTGTGACCAAATacgaaattttattttacacaagtataaacactgaaatagtttgcaaatatacagtatgatattttacataattccatttacatttaactaaatataCACAGCCAGCATAAGTTGaagataacaaaacaaaagactttCACACTAGATTATTTGCCTGGCAGAAACCAGCTTTGACACAGTGAGTAAACCTGAGTCAGTGTTGTCCTCTCATTCAAGTGGTCCTGTCttcatttgatgtttatttgtgCAGCTCACTCTACAGAATTAAggataacctttttttttccacagaacacAAATTCTTTCAGCTATTAGTGATACATTTCTTGTCGATGCTACTTCCATGCAAAATCTCAAGAACAGAAATCTTCACCACTAGCGCAGTACAATAGATCTCAGTTTCAACGATTCAGACGGCACTTGTATTTTGCTTTGCATTACTTCAGTCAAACAGGATGAAACAGAAACTGGCAGACGGCAGACTCAGAAAGAGGCAGAGAGGTCTATGTTTTCAGTACACCATATGTGAGCGTTTGAATTTAAGGAAGGAGGGAGGATCAAGATCGGACCCAGCTGACAGGCACCCACTGCGGCTCTCTCTCGAGTCGTTCCAGAATATTCCTCAGCTCTACACAGGCACTGGCAGAGTCCTCCTTTACCAGGACCCTGTCCACTAGGTGGCCATATTGCTGGTCCATCTGCTCGGCTGACTGCCTCATGTCCTGCAGGTCTTCGTCCTTTTCACATGTGATGTGTCCATTGTCACCCCTTCCTGGCGATGTAGGAGAGCTGCGCTGCTGACGTACCTCAGGGATGCGTGGCTTTACAAAAATCACATATGGCTTAAACTCTGCATTACGGAGAATTTTTAGGcctCAGGCTGAACATCTACCAGACAGACTTTACTTCTCGCCAGGACACTCCGGATCGACTCCAGACTCGTCCCATATTGATTATTCTTATATTCACCATATTCAATAAATCTGggcatacaaaatatatgttttgtgcCAATTCAAACAACAATTTTATTTGATaacactattaaataaataatcctaacccaaaaattaaaactgttatCATTTACCAAACCTGAATGGCATTCTCTTCCTCAGAACACATAAGAATAACAACACTGACAAAAAGCACACCCAACATAGATATTAAAACTGTTTCATACAACGTACTTATTTGATTGGATGTCAGCCTCAAAGGCCTGCTTGGAGATGAAGTGGTATTCCACACCTTCCTTCTCATGGCTCTTTctgggtcttgttgtgtctattaaaaacaaacacacacattatactaGCATTTCAGTTAATGTCACATGTGATTTTGCTAAACacaatatgtttatttgttactagaataaataaaaaaattgaagcTTTATCCTCAGATCATCAACTTGAAGCAAAAGTAGGTTCTTTTTTGATTCAGCTTCTTGACCTCCATAGAAAAACTAAACTCACGTGGCACAGCGACGCCATAGCGGTGAGGATTCTCAGCAATAACCTTCTGCTTTAGCTCATTGATCCGAGCACCAAGAGATCCTGCAGAAAAAAGGTAATGAGATTCTGAAAAAAGATTGACTCGTTTAAAATGTCCCGACATCCCTTGAATCTTACCTATCAGCACCACAAGCCTTGGTTTTTCTTGGAGCCTCATCTGATGTAGTGTCACCTCTTCATATATGAGGAACTCATTCTCTTCAGACTCTGCTGGACGCGACTCTTTGGTTGAACCCTGGTGATCCTTGCGGCTCAGTCTGAAGCTTCTCCTTAGACCAGCTGTGAGAGCAGAAAATGATTTTCCAATAGATCAACAAAGGTAAAAAACATCTAACAATATAgagaaaattagaaatagacatGACAGATTTACATGAACACAAAGATCAGACAAAAAGACAAGGATGGAAAGAGGTATATCCTCCAGACTAAAAATACCATGTGCCTCACACTGCTGCTGATTTTATGTAACAGCTGCATCTCAGGGGAAAATAGCAACACACTCTTCATCTGCTTTGTAAAATTTAATATGCAGTTAATCTGTTAAAGCAGCAATGCATCTATTCACCTTACAAGTATAAAAGAAATATGGTACCTGAGTAAAACTCCCAGGAAAAGGCCTGGCCACAGGACGGTGCCACCGCCTTACACTTTGGAGAAACTACAACTAATGTTAGACCATCACACATCCAGCAATGTTCTATAGAGACTATCATGAGCTATCAGCCATGCCAAAGCCTCTGGGATTCATTAGCAGAAAGCAATAGTTCCCTGACTATAGCAGTGCACCTGTTGTTCATACTTAAAGGAAACattcaccaaaaataaaagtttcatgCCCACACAAATTCCTTCCCTGTAAAAGCCCAATTCCATCACATAACACACGCTTTGCTAACTTATAATTATGAGATACAGAGTCATACCTAAGATAAAAGCGTTAATATGAGATAAatctaaattatgacaaaaaataaatacttgtaCTTGTCTCATAATTTCAACCATGTTATATGTTACACTGTTCTTCCAAGgtacactaaaacaaaaatgctggcatcttttttccataaaatgaaaaagaataaataaataattatataatgaagCTGTGaagatttaataaaatgcaaatatggtGCCAATGAGTCaggtatatgtaaatataacatcATAAATCATAGAAATTTGAATATGATGCAAAAGTGCATATTGAGTTTAATTTAAtctcattaattaattatcgctttagataaaagtgtctgctaaatgactaaatgtaatgtaaatgtaaatatctattcctcacaaaaaaaaacaacaactgtatgACTTCAGAATACTGGTACAGATCCTCATTCACTTTTTGAGTAAATTagagaatttcatttttgggtgaactgtccctttaagcagCAAGCACCAAAAACAGTAAGTGCATGAATCTGGCAGTCTTCATCGTAGCAAAAAGCACAcactaaaaatgactaaaactcaAAGAGGGAGTTGTCCGAAGCCGGCAGCAGAGCAGTGGGCTCAAGATGTAACCAATGGCTGGGGTCTTAGGATATGCCAAGCATATGAGCTCTGTGGTGAAGTGAAAACCAGATGATGTATGAAGCGCACCACACCACACAAAAAAGCATCATCCAAAGCCAAAGCCATGTGGAGTGCATTCAGTGTGTAAGGTGCCAGCTCTCACCTACGTGCTGTCCACCGACACTGCCCTCACTGTCACAGTCCTCTGGAGGGTAGTTGGGTCAGGAGAACACATAAGATGAAAGGGTACAGGCAGGAGAGGAGAATCAGTGGGGATCACATTTTACAAGGATATTTCACAGGTCAGAGTTATCGGAGAGGCAAAGAGAACCACGACAGCAGCAAGCACTGAGCGCAGGGATCTCAACATCTGTACTGGGTACTCAGAGTCTtgtagtttaaaaatgtatgggCTCTTTTCATTGACTAGCCATGAAGTACCAAACACCTGAAATACCCATTTTACAGATTTCTGAATTAATCTGAAAAGAATTTACAAATACTTTgacttcattagtttacacattattttatggtgtccttgttacagtaaaaataactgCTGACTaatatttaaagagatagtttacccaaattactcaccctcatataATTCTAAAACCTGAAAGACAGCATAGAAAAACCCATAGACAGCAGTAATCCTAACATGATCAAGATCAGTAGCaagaacattgttaaaataattcatcagtgacatcagtggttcaaatgtaattttacaaagctatgaTCTTGTAAGaatccttgctgtctatgggagggtCAGAGAACTCTTGGAATTCATCAAAAtgatcttaatttgtgttctaaagataATCGAAGGTCTTGCAGATTTGGAAAGATATAAGAGAGGGTAATTAAAgacagaatcttttttttttttggtgaactttacttttttattaacaaaaacaaattcattatAGGGTTAAAATTTCTGGTTAGTTGCTTGTGCACAGGCCAATTTCCTAAAAAGTTGGTacgtttttgtaaaatgtaataaaaaacagaatCTTGTATTAATTCTCTATACAATTTCAATATATGTCTCAACCCTCATAGAATGAATTTCGTCTTGCATGACAGAGATTCAGGTTGCATTTCTCGATGAAACCTTAGATTGTATTAagtaacagtgtttttttttgtactgctcCTAAGCTCATGTTGCTATATTTAATGTATGGTTTGCCATGAAGTAACATTAGGTGCACACTAAACAGGGGTTTCCTGCCTTTTAACCAAATTATGATACCCTTACCCCAAAGCAATTCATCTTTTTAACCAACTCTTTTACTTATATTTTGCCtatgtgcaaatatttttatatattatgttggTCAGTATAATGTTTTGTCAGTTAAATAAAGGTTTAAGAGAATTAGCAAATCACATTTGCTTTGATTCTTGCTTTTATTGAATTGAAAAAATgccaacttttttggaaataagttgcaattatgcatcatttactgttactgttacaAGGATACTAtacaataaagtgttaccttttaaattatttcgtatttaatgacattattttttcaaaatcactTACCTTTTTCACAAGTTTGGTCACCTGAGGTAAGCAGAGTGAGGAAACAAACACAATTGCTGAAACATGAATAAGTTTGAAAAGCAAATGAATAAGGAATCTTTCAAGTATTGTAATTTGTGGTAGATCTGGGTAAAATGTACACTTAGAGTCATTGCTTATCCTATATGCCTATCTCTTCTTAAACctttttcagtatatatttgtaCAGCACTTCCTGCAGACTTTGAGAGTTGTGAATGTAGAAGTGAATACAATGCAATAATTGTGTATTGGCAAGAATGTATAATTAAATCTGGCACTGTAGcctaaatgaattcatttaaatttggaATTGAATTGAATCTTGTGAACTTTCCCAAGCTTGTGTGCTTGCGATTCATAATCTAATCAAGAGTCTACATTGATACGCTGGCCCATATCCAACATTTGAGAGCATCTTAACGTAAGCAAAGGCCTGAGCGATAATCGATAACGATAATTATCACGATATACATTTTTCCCCcgataaaacaacaataaatgttctatataatgtttatatgcCAAAAGCAGACCATTATCCACTCGCGTCACAGTTCAAAGCTCTAAATAGCGCTGTGAGATCAAGTGTGAAGTTTAAAGCCAAACAGGAGAAACACTGTGGAACGAGACAGTCAAAAGGTTTTTCAAACTACACAGAAACGTGGCAGAAACGTGGGATATTCacatcatattttattacaggAGTAAGGGAACATAATTATATTTGTGATTAAGCTATATCACGTGTGCATTTATACTGAATGTGTTTAGACTAAGGTTACAGTTTTTCATACAAATATGCTGCTTAAATATCATAGTATTGCTATGTGTGGTTGCAAgtgactaaactaaaaaataaaataaaataaagatttgacatttattgTGACAATTATTGATATtgactgattttgttttttgtcctgACAAGCAGCACTGCATCCTCTTGGTAACCTGATTGGACAGGAATAGGAATATCTGACTACAGACTGATCAATATATCTGAATACTAGAGTTCCCTTCATTCTGTTTTGACTGGCACAATTCCATATTTTCTGTAATAGTTACACACCTAATTATGATGAGAGATGTTCAGCTGTCTGCTAAATAATTTCTGCATTTacaaagtgtttgtttaaatattaacaagaaacagtAGTAGGTATCTGTTATCTATGCAGTAAATAGTAGAAGAACTTACAAGGTGTTGCTCTAGGTGATTTAGGGCTCTGGTGTGTTCCCATTTTCATCCTATACAACAGTCGTCTGCAGATTTAggacaaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127590 lncRNA downstream 3925 7469027 ~ 7476130 (-) True G86216
TU127572 lncRNA downstream 94072 7380107 ~ 7385983 (-) True G86201
TU127570 lncRNA downstream 102860 7376898 ~ 7377195 (-) True G86199
TU127545 lncRNA downstream 175207 7303134 ~ 7304848 (-) True G86183
TU127546 lncRNA downstream 175207 7303134 ~ 7304848 (-) False G86183
TU127605 lncRNA upstream 15502 7502577 ~ 7504461 (-) True G86230
TU127609 lncRNA upstream 35589 7522664 ~ 7523001 (-) True G86232
TU127743 lncRNA upstream 101236 7588311 ~ 7590983 (-) True G86324
TU127746 lncRNA upstream 105726 7592801 ~ 7596998 (-) True G86325
TU127752 lncRNA upstream 128793 7615868 ~ 7617213 (-) True G86330
XM_043254022.1 mRNA downstream 115040 7359383 ~ 7365015 (-) True kcnj19b
XM_043253936.1 mRNA downstream 297221 7174618 ~ 7182834 (-) False acbd4
XM_043254313.1 mRNA upstream 17641 7504716 ~ 7521406 (-) True hectd2
XM_043254236.1 mRNA upstream 40001 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 40001 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 65057 7552132 ~ 7554852 (-) True rpp30
XM_043253276.1 mRNA upstream 86096 7573171 ~ 7578201 (-) True LOC122355224
TU127575 other downstream 91145 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 375837 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 808808 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1406623 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1425702 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 861087 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 1031160 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 1031905 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1123477 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 1195977 8683052 ~ 8687548 (-) False plbd1b

Expression Profile