RNA id: TU127593


Basic Information

Item Value
RNA id TU127593
length 1922
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G86219
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7502578 ~ 7504499 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctgtataactttattcattaaaaatgaatgagcaaagttgaaataaatacattgtaaatacatttgtattcagTCATCGCAGAACATGAAACAATAGCATGTGGAGCATAGCAATCTGGAGTGATTCAGATTGACAGgtgacataaatacacataaagcATGAGCCCAATGAAAATCACATGACATGATGAGCcagaaatatgcaaaaatgcacCAGCTAATCACACAAGCCAAGCCCCGATAGATAGGAAGACTGATGTACACCCCACTAGTTAAAGGTCATCCACTAGCATACTAACATACCGCAGTATCACTAGACCTTGAGTCCTAAATGAATTGTGCCACTGATGGCACGAAGCAGAGCATtagtcagaaaaataaattatgttttttttttttgttgtgaccAATACTGCTGTTAACCGCTCTATATGAAGAATAACCGGAATCActattcaaacaaacaaacaacaactaaaaagaTTCAAATAAGCGCAAACAGTTCTTCCATGTTATGGCTAGTAAACGAACATGAAACAattgctgacacacacacacacacacacacacaaaatctagTCACATTACCAATATTCCTTTCATGCCCGAGAGAGGTTGAGAAAGGGTTGTCAACAAGTACTAAACTACACGCAACCGACATTTGAGCTCAGACCTTAAATTTGAAAAGATCGTTAGTTTattaaaagctacattttagaAGCTAATCGGAAGCAGAGGGAATGCTTGAGTTAAGGAACGTTTCACACAGGAGCTTTTAATAACTGTGGGCTCCTGTATCCCTGGAGACAGAgcgctgtccctttaagaatgcTGGGCAAGTTTGACAGACTGTTTGCCAGGCTATTTTAGCTGAGACCAAGCCCCTTATTGACCTACTTTTAACAGGAGCACGGGGCATTATCAGGCCCgcgctgaagaaaaaaatccttaacattttaactttaatttcacATTGCAGTAAAATAGAGCTTCTTGAACAGATTTACACTATATCATCCATAAATTCCACATATTCTAATACCACACGAAATGTTCGGTCCTTCACTCAAACAGTTAGCAATGATGTGTGCAAATCGCACAGTGACTAAAGATGAATATCTTAACTGGGTTCCTCACAAAACCCTGGTTTACAACAATTAATACTACTTTTTACACACATTCCACAATATATCATCCTGCTTAAACGTTACATCTAGAGCTTACATTATCACTGCTGTGCATTATCCTCCTGCTTACCTGATGTGGCTGCTAGGATTGCGCAAAACTCAGAACAGTTGAATTGTCTCTCTACTAATTCCTTCATGAGTGTGAATTGAATTTAGCACAAAGGAAGCTGAATTGGAATTTTAATTGGCATGACAAGAAGTGGAATTTACTGcagaaatgtaagaaataaaGTGCTCTTTCATCCTTATCAGCAACTAACtaataagtcatttttaagtttGTATTCTACCTCTCTATCTACGATTTTCTAAGGTTACTAAAAACATCTCTTCTGATCAccaaggctgtgtttattttattattgttattattattaacaaaataactgttttcgtttatttgaaaatgttgtttatcCCTGTGATTGCAAAGCAGTCattactacagtcttcagtgtcgcatgatccaattattattattcattttaaaaacagatgtgctggttaatatttatgtagaaaccataatatatgtatttcagcattttttaataaataaagttaacatttgtttaaaatattttgtaattttgtatgcCTTTACTGtattactaaatgtatttaaatgtatatattgtcacttttaatcaatttaacacatcccTTGGcgaataaaagtaataattttagtgctgggcaatgactAATCGCATccgaaaaaaaaatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127574 lncRNA upstream 113597 7387668 ~ 7388981 (+) True G86202
XR_006252184.1 lncRNA upstream 182987 7317500 ~ 7319591 (+) True LOC122355189
TU127492 lncRNA upstream 197730 7303138 ~ 7304848 (+) False G86142
TU127680 lncRNA downstream 196844 7701343 ~ 7701799 (+) True G86275
TU127689 lncRNA downstream 214485 7718984 ~ 7719283 (+) True G86283
TU127673 lncRNA downstream 215893 7720392 ~ 7723861 (+) True G86268
TU127670 lncRNA downstream 320773 7825272 ~ 7834145 (+) False LOC122355675
TU127671 lncRNA downstream 320773 7825272 ~ 7844083 (+) True LOC122355675
XM_043254149.1 mRNA upstream 9753 7487720 ~ 7492825 (+) False ppp1r3cb
XM_043254148.1 mRNA upstream 9753 7489129 ~ 7492825 (+) True ppp1r3cb
XM_043254401.1 mRNA upstream 15880 7473723 ~ 7486698 (+) False mpp3b
XM_043254403.1 mRNA upstream 15880 7473723 ~ 7486698 (+) False mpp3b
XM_043254402.1 mRNA upstream 15880 7473884 ~ 7486698 (+) True mpp3b
XM_043253176.1 mRNA downstream 44505 7549004 ~ 7552494 (+) True ankrd1b
XM_043253009.1 mRNA downstream 50514 7555013 ~ 7566171 (+) False kif20bb
XM_043253011.1 mRNA downstream 50514 7555013 ~ 7566171 (+) False kif20bb
XM_043253012.1 mRNA downstream 50514 7555013 ~ 7566171 (+) False kif20bb
XM_043253010.1 mRNA downstream 50525 7555024 ~ 7566171 (+) True kif20bb
TU127500 other upstream 194349 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 197730 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 980007 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1061052 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1286011 6214919 ~ 6216567 (+) True G85986
TU127672 other downstream 311324 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1200761 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1331949 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 2252774 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 2367165 9871664 ~ 9873895 (+) False LOC122355252

Expression Profile