RNA id: TU127680


Basic Information

Item Value
RNA id TU127680
length 457
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G86275
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7701343 ~ 7701799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCAGGATCCGCGCCATCTGTAGCTTGTGAAATGGTGCCACACCACAAAGTAGGCCTTGTCAGGGAAATGTGCGTCCCCATAGGAtggaaaaatcacaaatgagttCTCTTTAATATCCCCAATTGTTTTAGCAGCAGGAAGACTGATGCAATTGTTCCATACTCTTATATttgttcacatttatatttttcacaagcacatttttgttgtatttttgtccatcatattttaaattcGACCCCTTGACGTAAGGGACATGTCATATATGTATTGCCAcatggaggggaaaaaaattctatatatattgcAACAtgatataaactataaaattatCGGTCAACCTGCATTTTATCAATgccaaatacagtttttacttttatttagcacatgaatttacttttatttaatattacaccCAAGACATTTTAGGAGAAACAAATGAGAGAAAGTTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127593 lncRNA upstream 196844 7502578 ~ 7504499 (+) True G86219
TU127574 lncRNA upstream 312362 7387668 ~ 7388981 (+) True G86202
XR_006252184.1 lncRNA upstream 381752 7317500 ~ 7319591 (+) True LOC122355189
TU127494 lncRNA upstream 396495 7303138 ~ 7304848 (+) False G86142
TU127689 lncRNA downstream 17185 7718984 ~ 7719283 (+) True G86283
TU127673 lncRNA downstream 18593 7720392 ~ 7723861 (+) True G86268
TU127670 lncRNA downstream 123473 7825272 ~ 7834145 (+) False LOC122355675
TU127671 lncRNA downstream 123473 7825272 ~ 7844083 (+) True LOC122355675
XR_006252237.1 lncRNA downstream 131303 7833102 ~ 7843783 (+) False LOC122355675
XM_043254395.1 mRNA upstream 4614 7663106 ~ 7696729 (+) True rnls
XM_043254396.1 mRNA upstream 4614 7663106 ~ 7696729 (+) False rnls
XM_043253710.1 mRNA upstream 49599 7648181 ~ 7651744 (+) False ankrd22
XM_043253711.1 mRNA upstream 49599 7648200 ~ 7651744 (+) True ankrd22
XM_043253898.1 mRNA upstream 65195 7630560 ~ 7636148 (+) True acta2
XM_043253461.1 mRNA downstream 41036 7742835 ~ 7747786 (+) True atad1b
XM_043254285.1 mRNA downstream 61190 7762989 ~ 7777555 (+) False cyth3a
XM_043254284.1 mRNA downstream 62062 7763861 ~ 7777555 (+) True cyth3a
XM_043254281.1 mRNA downstream 94461 7796260 ~ 7802299 (+) True pms2
XM_043253021.1 mRNA downstream 101035 7802834 ~ 7807610 (+) True rsph10b
TU127500 other upstream 393114 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 396495 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1178772 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1259817 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1484776 6214919 ~ 6216567 (+) True G85986
TU127672 other downstream 114024 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1003461 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1134649 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 2055474 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 2169865 9871664 ~ 9873895 (+) False LOC122355252

Expression Profile