RNA id: TU127998



Basic Information


Item Value
RNA id TU127998
length 2213
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G86505
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8187641 ~ 8190285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGATTTTTAACAAAAGACAGTTTATTAACAGAAAACATCAGAATACATTATAGCAAgctataaaaactaaaacaacaaatacttTTGGCAAAGAGACAATAAAGTATCAGAATACAGAAAGGTTTAGAATACTGCATCAATAGAAATGTTTGACAATATCATACAACGCTTTACAAGTTATCTTGACTTTAAAAAGCTTGCGACACGAGATCCTCCGAGGGCCTCTCTCCATCACTTGAAAATAACGCGGATCTTCTTGTCTCCCACTACCAACCTGGAACGAACAACACAATTGCTCAAATACTGACGTGTCACTGTCCATCTCAGGACTGAACGTTTCAAACACAATGTACATAAAACACtaatgaacttttttatttttttatttcagtctgaTCAGCCTCCAAAGGCGTCATCTTTACGCACTCAGTGGCTTCCTAAAGGATTGTTCGAGGTAAAAGTGAGCATCGGGAATACCTCACGAGACTGACGGTGACCAGAGCGCCGGTCAGAGGTCCCACCCAATATATCCAGTGGTACTCCCAGTGACCGGACACTATTGCTGGCCCGAAGGCCCGTGCCGGATTCATACATGCCCCTGATATTCCACCCCTGTCGAACACGAAAGACAAAATCAGTCAGACGTACAGGCTGGAAGACTGGCTTTAAAAAGTGACCCAAATACAgcacattaacacattttattgttaGTGTTCATTATTTCCTATTGCCGTTATTGTTCTGAGGCTGTTTAATGTCTTAGTTTCCTGTAACATATCCTGcgattttcagttcatttggtTACTGCGTTCACTAGAAACAGCTCTGGGAAACTTCGAAAAATCTCAGCCATATTTAAAgattgatgtttttatattcCATTGTTTTATACGTTTTAAAATACGCATGATTATagtataattgtaataattataaataaaacaattatgtttaatgtaaatcaTATAGATgtgtttataaacaaaaatgtgttattatagttatttgttttatttttattagccgTTTTCtgtataataattacattaacattatattCAAATCACCCATGTTCACAGTTATTACCCATCTACATAGTTCAGGTAAAGATTTGtgaacttttttcatttcaatagcATATAGTATTAgtatacagtaatattatgtCACATTTGGAgactcaaataaaacaattaaaaagcaatTGAGATACAGACGTTTGAACACAGTGGTTCTAGTcattcttatatttaatattttctaatatttaacaCAAATGTTCTTTACGGCTGCAGAACAGATCACGTTTTCTTAGGCCATATCATTTCTTTTTGCGGTTTGCATGAAATATTAGCTCCTACCCAGCCAAAATATTTGCAGTCACCGTGAGCCCAATACAGAAAGGAGCCAGATGGCTTCGGGTCCTTCCGTTCACGGCACCCATGCTCACAACCATAGTCAGGAACAGGGTCATAATCATCTCGGCCACGGTCGCAGAGCCAGTTCCGTGAGATGACTGGACGGCGTCAAACGCTGCTCCCGTTGCATTGTTAAACGCTTCGTTCGTAGTGACAGcctaaaggaaaacaaaaagataacTCTCGGGTCATGGAAAAGGAAAGTTTTATTGTCAGTGCGTCGTTTCAGTCAGTTACGCTTCATCACGTCAAGTCACTAAAAATGAATTTCACAGAGAAGCTTGAACGCATACTTTGGCGAGGCTGGCAGCAATCACTCCACCTAACATTTGCGAGAGCACATATGGCAGCAGGAGCATCAGTTCCATTCCCCCGAtgaggtaaacacacacagacacggctGGATTGAAGTGACCGCCGCTGGAAAACATCATCAGTTCAACTGAGCGTAAATCAAACGCACAGAACATGGCAGGCGGTTACCTGATTTCTCCAAAAATGGCAATTGCTATAGCCAGTGCTAGTCCGTGTGCCAGCGCAGGCTGGATGCTCCCGCTGATTCCCACGTTGCCCATGACCGACACACAGCCTACAAACATGAAGAGAGTGGAGCCGAGGACCTCCGCTAGGCACGGCTGAATGTAGTGCTCATAGAAAGACAGCTTCTTGGGCTGATTCTGATGGGCATCCCCTCCATCGCCGGTGGCTACCGTAAAGAGCTCCGACTTGGACTCGGCTGAGGTCATCTCGTCTGTGTGAAACTTCAGGTGATCTGTGCTCGCACACACTGCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128010 lncRNA downstream 33468 8148747 ~ 8154173 (-) True G86513
TU128016 lncRNA downstream 74928 8111193 ~ 8112713 (-) True G86516
TU127922 lncRNA downstream 132610 8054768 ~ 8055031 (-) True G86458
TU127863 lncRNA downstream 296420 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 299395 7887966 ~ 7888246 (-) True G86412
TU128056 lncRNA upstream 8633 8198918 ~ 8199124 (-) True G86553
TU128087 lncRNA upstream 99795 8290080 ~ 8290410 (-) True G86576
TU128132 lncRNA upstream 144122 8334407 ~ 8338700 (-) False cpped1
TU128137 lncRNA upstream 149171 8339456 ~ 8339815 (-) True G86606
TU128139 lncRNA upstream 154051 8344336 ~ 8344609 (-) True G86608
XM_043253703.1 mRNA downstream 8534 8155233 ~ 8179107 (-) False arhgap17a
XM_043253702.1 mRNA downstream 8534 8155233 ~ 8179107 (-) True arhgap17a
XM_043253112.1 mRNA downstream 58622 8126083 ~ 8129019 (-) True zdhhc4
XM_043253024.1 mRNA downstream 65551 8120334 ~ 8122090 (-) True LOC122355067
XM_043253006.1 mRNA downstream 67831 8115390 ~ 8119810 (-) True bricd5
XM_043253164.1 mRNA upstream 3938 8194223 ~ 8195216 (-) True hbae5
XM_043254435.1 mRNA upstream 13289 8203574 ~ 8205720 (-) True zgc:163057
XM_043253226.1 mRNA upstream 72825 8263110 ~ 8266628 (-) True foxj1b
XM_043253227.1 mRNA upstream 72825 8263110 ~ 8266368 (-) False foxj1b
XM_043253549.1 mRNA upstream 77489 8267774 ~ 8278165 (-) True mgrn1a
TU127575 other downstream 798731 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1083423 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1516394 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2114209 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2133288 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 157877 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 327950 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 328695 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 420267 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 492767 8683052 ~ 8687548 (-) False plbd1b

Expression Profile