RNA id: XR_006252254.1


Basic Information

Item Value
RNA id XR_006252254.1
length 677
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122355856
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8204145 ~ 8206748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGTTAACAAGGGAGAAAAACAAGGTCAGCGAGACACGGGCGGCACGAGTACTTCCTCCCACTCCGCTGCTTGCGTCACCACTCGTGGGCAAGCGGCAACTACGAAAAGACTATCAATCATTGTACTTTTTGATATTCACAAAATTGAACGGCGAACTATCAAGGAGCCACCAAACAGCATGCACTTCTGTGATAGGGAGGGGTCGAGGCATCGGGTCTGATAAACCCTTATCAGGCTTAATCACCCGTCTCACTCCCGCCCAGACCCTGGCTGCATGAACTACCCATGACTCAGCTAAACTCAACATCAATGTCTTTAATGCATTCAacatctttttacattttggggaATGTGCCGTTATGAGAGGTACATGATTGCGCTCAGGTCTGTTGGCTCTGTGTGTGGGTGCAGCTGTTAAGTTGCTTCATTGCGTATtctattttctaataataatcaATCTAAAAATCATACacttatgttttgttattttatataatggtTTATGATGAAAATGTTTGTGCTTTGTTCAATTTTGTGTCTAAACGGTGACATATCGTTATCATTATGTAATATGTGTTCGtgtaaagtgttttattaaatgttttgtcaaataaacacaatgatTGAAGAGTCTGGTCgctttagaatttaaaaattaaaatttatatcgCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128037 lncRNA upstream 2 8203583 ~ 8204143 (+) True G86536
TU128041 lncRNA upstream 5735 8198094 ~ 8198410 (+) True G86540
TU128039 lncRNA upstream 7949 8195985 ~ 8196196 (+) False hbbe2
TU127947 lncRNA upstream 97372 8105148 ~ 8106773 (+) True msrb1b
TU127924 lncRNA upstream 143969 8056931 ~ 8060176 (+) True G86460
TU128088 lncRNA downstream 85095 8291843 ~ 8292062 (+) True G86577
TU128123 lncRNA downstream 137921 8344669 ~ 8344968 (+) True G86593
TU128273 lncRNA downstream 475641 8682389 ~ 8686117 (+) True G86713
TU128340 lncRNA downstream 666579 8873327 ~ 8873545 (+) True G86756
TU128342 lncRNA downstream 668367 8875115 ~ 8875455 (+) True G86758
XM_043254108.1 mRNA upstream 1393 8201945 ~ 8202752 (+) True hbbe3
XM_043253163.1 mRNA upstream 6241 8195964 ~ 8197904 (+) True hbbe2
XM_043253396.1 mRNA upstream 10782 8191318 ~ 8193363 (+) True aqp8a.2
XM_043254442.1 mRNA upstream 13865 8187553 ~ 8190280 (+) True aqp8a.1
XM_043253084.1 mRNA upstream 18171 8180004 ~ 8185974 (+) True lcmt1
XM_043254450.1 mRNA downstream 8818 8215566 ~ 8243257 (+) False rhbdf1b
XM_043254451.1 mRNA downstream 8818 8215566 ~ 8243257 (+) False rhbdf1b
XM_043254452.1 mRNA downstream 23514 8230262 ~ 8243257 (+) True rhbdf1b
XM_043253553.1 mRNA downstream 72320 8279068 ~ 8288769 (+) True ubald1a
XM_043253552.1 mRNA downstream 85988 8292736 ~ 8303541 (+) True LOC122355370
TU127672 other upstream 360062 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 895916 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 899297 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1681574 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1762619 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 498512 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 629700 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1550525 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1664916 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2274867 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile