RNA id: TU128088


Basic Information

Item Value
RNA id TU128088
length 220
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G86577
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8291843 ~ 8292062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTATGACCTTGGCTTTGTTAGCGCCATACTCTTCTGTTCGATATAACATTGTGTATCTTGAGAGTGTCTGCTTGCTAAACACACAGTCCCGCTGGTATGAGTTTGTGTTTGGTCAGACAAGGGTAATGACTGCAAACCCAAGCAGATATCTTTACGTCTCTCAGCTGATCTGATTTGTCCGCTCTCTTCCTCCCCGTGtgcatattttttgtataaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252254.1 lncRNA upstream 85095 8204145 ~ 8206748 (+) False LOC122355856
TU128038 lncRNA upstream 85170 8205055 ~ 8206673 (+) True LOC122355856
TU128037 lncRNA upstream 87700 8203583 ~ 8204143 (+) True G86536
TU128041 lncRNA upstream 93433 8198094 ~ 8198410 (+) True G86540
TU128039 lncRNA upstream 95647 8195985 ~ 8196196 (+) False hbbe2
TU128123 lncRNA downstream 52607 8344669 ~ 8344968 (+) True G86593
TU128273 lncRNA downstream 390327 8682389 ~ 8686117 (+) True G86713
TU128340 lncRNA downstream 581265 8873327 ~ 8873545 (+) True G86756
TU128342 lncRNA downstream 583053 8875115 ~ 8875455 (+) True G86758
TU128592 lncRNA downstream 1006208 9298270 ~ 9298849 (+) False pkd1b
XM_043253553.1 mRNA upstream 3074 8279068 ~ 8288769 (+) True ubald1a
XM_043254450.1 mRNA upstream 48586 8215566 ~ 8243257 (+) False rhbdf1b
XM_043254451.1 mRNA upstream 48586 8215566 ~ 8243257 (+) False rhbdf1b
XM_043254452.1 mRNA upstream 48586 8230262 ~ 8243257 (+) True rhbdf1b
XM_043254108.1 mRNA upstream 89091 8201945 ~ 8202752 (+) True hbbe3
XM_043253552.1 mRNA downstream 674 8292736 ~ 8303541 (+) True LOC122355370
XM_043254286.1 mRNA downstream 69123 8361185 ~ 8388328 (+) True shisa9a
XM_043253406.1 mRNA downstream 243924 8535986 ~ 8541171 (+) True maff
XM_043253208.1 mRNA downstream 276716 8568778 ~ 8573399 (+) True si:ch211-141o9.10
XM_043253210.1 mRNA downstream 276716 8568778 ~ 8573399 (+) False si:ch211-141o9.10
TU127672 other upstream 447760 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 983614 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 986995 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1769272 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1850317 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 413198 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 544386 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1465211 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1579602 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2189553 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile