RNA id: XM_043253551.1


Basic Information

Item Value
RNA id XM_043253551.1
length 5147
RNA type mRNA
GC content 0.39
exon number 4
gene id cpped1
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8334404 ~ 8359992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCATCGATTTGCAAACACGCTCATTAAGTAACCCGTGACTTTGTCAGATTTCACAACGCACATCCAAAACACGATAACGAAATATAGTTTGAACGGTGTTTTGTCCTATATGTAACGTTAGTGGACGCGTTTCAATGGCAGTGGACGAAAGTGTCTTTCTGAGAGCGAAGGAACGGAGTTATAAGGGGCTGACCGAAGATGAACAGAAGGAGTGGAACGGGCCCTTCTACTTCATCCAGGCTGCGGACCCCCAGCTTGGCCTGATGAAGGCGTGGAGGATTGGTGACTGTGATTCAGGAGGGGATGAGTGGACTGAGGAGGTCCGGCTCACAAAACAGGCAATCCAAGCGATCAACAAACTACGGCCCAGACCTCACTTCCTGGTCCTGTGTGGAGACCTGGTCCATGCTATGCCTGGATGTCCGTTCAGAGAAGAACAGGTTAAGGACCTCaaagaagcactgagaggcacTGACCCCGACATTCCTCTTGTGTTCGTCAGTGGCAACCACGATCTTGGCAACACACCTACTCCGGAGAGCGTGGAGCAGTTCTGCCGCCACTGGGGCGATGATTACTTTAGTTTTTGGGTGGGTGGGGTGTTGTGTTTAGTGTTGAACTCTCAGTTCTTCTTCGACTCATCGGGCTGCCCCGGGTTAATGGAGGCCCATGAGGTCTGGTTGGAGAGCCAGCTGCAGAGAGCCACCCAGACCCCCTCCCACCACGTGCTTGTCTTCCAGCACATTCCGCTCTTCCTCCGTACACCGGATGAAGAGGATGACTACTTCAACCTGCAGAGAGGAATCAGAGAGCGCTTGATCCAGAGATTCAAACAAGCAGGGGTGAAAGCTGTGTTCTCCGGTCACTACCACAGAAATGCAGGGGGCTGCTATGATGGGTTGGATATGGTGGTTAGCTCCGCTGTTGGTTGTCAGCTGGGAGATGACACTCATGGTGTGCGAGTGGTGGTAGTTACTGAAGATGACATCATCCATCGCTACCATAGTCTGGACCAATTAACCGAAAGAGGAATGGACGAAGACCTGAAGAAATTGTTGGTTTGAGTCCACCTGCTGATCACTAATCATGGGGTTGTATCTTCATCTTCAGCATTCATTATAGAACCTGAGCCattgtttatacatttagaGCTATCAGGTACGGAACAAAAAGAGCTCAGAAGAGTTCACAATACATTagtaagcattaaaaattggATCCAGTGGCTCTTTTGATCTTTGATACTCACATCATCTGTCTCCATACTTTAATCATGCAAATACGTCGGAGAATTTCTTAAACACTGAAGTTAAATCACCTCATCATACTAATGGAGTGAGGAGATGCTAGGGTACAATGGTAGTTTAATAGTGCTGAACATTTTGGATGACAGTTTGATGAGTTCACTTCTTGCTCCTCTCTGCTCATTACTCTGAGAGGAGGAAAGAGGCAATCTCCATGGTAACTATTGAAAGACGTGGCTGCGGTGACCGGGACATCGAGTCACTTGTTCTGTGGGTGGATCACCAAAAACATAATTGCTGACCTCACCTCACACTTAGAAGCTCTGAAAACAGCCGGGTGTGACTGAACGAATTTGCCGGCGTGCACGCAGCAAGAAAGACATCTTAAAATGACCAAGATCTTGTCTGAATCTGTGACCTCGTAGCTTTCTCACTAGTGTCATACATGCTAAAATTAAACGGGATATTTTCCAGTTTTCTCTGAATCTTTCCATGTAACATTTCTGTGTAATTTCTAATGCTACGATCATTCAGAGGGGTtcagaaaaaacataaattatgtaattggCATTCGGCTTGAGTGTAAAGTTGAACTGAAAATGAACATGATTATCAGAATGTTGCAGCATTTGATTTAATGGTGGTCTGCAGGAACATCTGAATGACTTAATGTCCTGCACAATAGAGTTCACACATTGCAGATTTACAATAACACTTAACAGGAAGGTCCTATTTGTTAACTAACATGAAGTAGCAGTGGGCAATACAATTTTGTGACGTTTATTAacgtttattaatgttaaaaaatacatgttcagcttttgattaaaatagatattagtaaatgttgaatTTAACATTAATCAAGACtgataaatgctgtagaagtattggtCATTGTGATTTCTTAACTAATGTGgttaataatgttaacaaattaaatactgGAGATTGTTACCAaatttacttctttaaataaTGACTTAAGAATCAATGATAAATGCAGAATTCGAAACATTTTTTATACgtttcatctttatttaatttttttcaaaatcttatAACTGTGATTATTTCAAGATTTAAtggaatacattatttttagaattatatgcagtacatattttatattatacttcaaatgacagcaaaattaatagaacaaaaatgtcattccTTGCCTGTATTTTCatgaattagctttttatttgaaGATCTTTGGGTTATAAATTCAGGGCTCCTGACTGCCAATACAATTGAtacaaatatgacaaaaaaatacatttgcaggAATCATTTCAAATGCAGTTACCACTGTCAAGAGTTAGAACTTTGAGTGTTGTTATTCAGAAAAGAAAGATTCATAGTTGGAACTTTGAGTCTTAAGAGCGGTTACTGAACTGCGAGACATTTTTGgataatgtttaatgtaagtGAACCATATGCAGAAAGATGTGCagaattgtatttgtatttatatttaactacTTTCAAGATAACTAAAGTGACAGCATCAAATGgtaaaaaagcagaaaagaagTCACTAAACGAATCAGcgacagaagaaaaaaaatccttcattaCACAAAACAGTCTTTCCCGTTGCTAGCAGCTCACTGCACAGATCTGACTCAGTGAACCTAGACATAAAATGTCCCCTGTCATGTTACCTTATTTTCTCTCCAGCTTCTTCCTCTTGTATATTGAAAGCATCTTCCTGTGCTTTTTGTTCTGATCTCAGGCCTGAGGACAAGTAATCAGCATGTCACTCTAAGATAGCATGCGGTACTCCAGGATGTACAACATAATACGATTTGTCCAGGTCAGTGACTGCACCGTAGTAATGGCCTCTGTTCTTACATTGATAATTTGGATATGTCACAGCAAGTCAGCTGTAAAGAGATACACaggtttctattattttttcaggtttcttacAGAAATAGGCCATTGGTCCATTTGTAAAGCACAGTTTTTCTTGCCTGTCCTGGTTGATTCTCACATGGACAGGCAGCATAGCATTGTAGATGAATTCAGTCTTGGAACAGGAGGACATTTGACATTTAGCAGGTTGGTTTTCTTCACACAGCAGAATGAACTCCTACACTGAGTAAATCACAGGGCATCAACAGCCTGACATATAAACCACCAATAATAACCACCTGCCGAACAGCCAAAACTGGCTTTATCTTAGCTGCTATATTGAAGAGTAAACTTATTCCACAGTTAATTCCGGTCTGCCGGACCAATCAGAAaagtaggaaaaaataaattaaatatgaaatgattcAATCTGTGACGGGGCATTTTTCTGCAGGTTACATCTACACGGCATTAGGTGTTCAGCTAATTCATTCTAAACATCGATTCGTGAGTGTTTTTTGAGCGAATCACTGATCAATTCACTcacagattcatttaaaaatgttgattcatttacagtctcagaaaaaaaggtgtCACGGTCACAATACTCTAAGTTGCAAAAGCGAAAAGGTACATCTTTGTACCCTATTTACtgctaaattgtacatattagTAGCTTTTAAAAGGATACCGACCGAGTAACATATTtgaaactttttctttttaatggtaTGTTGTTTAAATGAGTGatatgagtgagtcattgaataatTCACTTAACTGTTTCATTGAAAAACGCTGCTTCATTCAGGAACGAAACACCATTAACAGTTTTTCAGATGCTTTATTTGTGTGTCTTGATAGCAAAAGTAGACAATTATTTCTGATCTAAGACACGTCAgacaatattaaattattgctaGTAAAGGGGCCAAATACAAACACGAACAAATCTGCAAATGTCAGAGTTTACGAAAAGGTGTCTTAAAACTAGATAAAGGCCACCTGTGAGCATTCCCACatctaaatcaaaataaataagtaaaggGTCCTAAAGTTTCTGAAGCGAGAACTTTCCACAAGCCAACACTTGAGGTTGTCAGTCAACCCTCACACAGACTTTGACAGATTGCTGTACAGTCTGCCCATCTGCGCAAGCTATTTTAGTGGAGTTGGACTGTAAGTCGTTTTCAGTATGCAGCGAGGTGGAGGGCACATTAGCAAAGAGACGGAGACACACAACATCATTAAGATGCCTCATTGGCATTGCAGAATGACTTGGCCTATAAATACCTGTCTAAATAAGACTAGAAAACCCTATTCGTTTTAGACAGATTGAGATTTTACTTCCAATAAATGTGCTTCTCATACATAATGCCATGGATCGTGTGACCTCCTATAAGACCTTGTCTTGTTTATACCTCTTTTGATTCTTTAATTAGAATTTCAACTCCTTTCTTAGCGTAGACATGACTTATTCTCGCAGAAGGTTTCTATATACTACATTGTATGTGAACATTAATCCCTTTTTTACTGGTTCTTTTAAAATCCAGTAAGAATACTAATGCGGATAATCTTCCACCACATTTTCTCACACCGGGCAGCCTTGATTTTCATCCTCTGCTTCAATTAGATTATTACACACGATATTAATATTTGGATTAAAGGGAATTGCAAAATGGggctaatatttttaaaagcacctTTAGACTTATCAGCCACACTGCAGTTCGGTTTCAACAGTGAGAGCTCcgtttttaaattcattcaacTGTCTGATCAAATGGAGCAGCTGTAGTAATTTCGTAAAATATCAAATGTGCCTCGACTTTCAGCCGCAAagtattttctgttattatttgttctgttgaaatgcattttctggTGACTCACAgcagtgcattttaaatgcgAGACAGCAGTGAAGTCGCAACTGTGATTTTCCCAAAACACTCTGTATTACTGAAAGATCATTTATCATGTAACTAGCCCGTTTATTTTGTATCCTTGAAGCATTAAAATCCCACATGAACGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128087 lncRNA downstream 43994 8290080 ~ 8290410 (-) True G86576
TU128056 lncRNA downstream 135280 8198918 ~ 8199124 (-) True G86553
TU127998 lncRNA downstream 144119 8187641 ~ 8190285 (-) True G86505
TU127996 lncRNA downstream 145487 8187641 ~ 8188917 (-) False G86505
TU128010 lncRNA downstream 180231 8148747 ~ 8154173 (-) True G86513
TU128374 lncRNA upstream 151643 8511635 ~ 8513245 (-) True LOC122355061
TU128385 lncRNA upstream 175981 8535973 ~ 8538206 (-) True G86775
TU128416 lncRNA upstream 237402 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA upstream 263305 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 267102 8627094 ~ 8630207 (-) True G86809
XM_043253547.1 mRNA downstream 2865 8325243 ~ 8331539 (-) True ercc4
XM_043253545.1 mRNA downstream 9363 8303767 ~ 8325041 (-) True mrtfba
XM_043253546.1 mRNA downstream 15309 8303767 ~ 8319095 (-) False mrtfba
XM_043253549.1 mRNA downstream 56239 8267774 ~ 8278165 (-) True mgrn1a
XM_043253548.1 mRNA downstream 56240 8267774 ~ 8278164 (-) False mgrn1a
XM_043253993.1 mRNA upstream 57240 8417232 ~ 8511214 (-) False snx29
XM_043253992.1 mRNA upstream 57240 8417232 ~ 8511213 (-) True snx29
XM_043253994.1 mRNA upstream 57240 8417232 ~ 8511212 (-) False snx29
XM_043253017.1 mRNA upstream 151411 8511403 ~ 8513265 (-) False LOC122355061
XM_043253016.1 mRNA upstream 151411 8511403 ~ 8513264 (-) False LOC122355061
TU127575 other downstream 945494 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1230186 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1663157 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2260972 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2280051 6051723 ~ 6054353 (-) False LOC122355418
XR_006252260.1 other upstream 158243 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 158988 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 250560 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 323060 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 327506 8687498 ~ 8687570 (-) True trnar-ccu_66

Expression Profile