RNA id: TU128416



Basic Information


Item Value
RNA id TU128416
length 305
lncRNA type read_through
GC content 0.44
exon number 2
gene id G86798
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8597394 ~ 8628972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCGTCGCCTTCGAGAAGATTCGGCGGCGGAATCTCCatgattttctttaaaactacTGGAAAGGCAGGAGAAGGAGTATCAGAGCCTGCGTCCATCCTAACGGAAACAGGGTCCACGTCCATATTGACAGACGCTAACGTGCCGCGCGTAAGAATAGCCTAACTTTAACGTAACTTGAAACTCCTAAGTTAGTTTAATCAggcaaattatattaatatactcAGTGCCTTGagtattaaaaatcaaatctgaAATCAGCTCGCGGGTTAACACGTTTCCATTCAGACTCTACTGGCTGCtcagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128385 lncRNA downstream 59188 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 84149 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 252785 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 257579 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 258694 8334407 ~ 8338700 (-) False cpped1
TU128455 lncRNA upstream 46674 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 46674 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 51133 8680105 ~ 8744645 (-) True G86826
TU128502 lncRNA upstream 192908 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 209379 8838351 ~ 8838612 (-) True G86852
XM_043253204.1 mRNA downstream 27320 8556275 ~ 8570074 (-) True tnrc6ba
XM_043253205.1 mRNA downstream 41743 8550384 ~ 8555651 (-) True csnk1e
XM_043253405.1 mRNA downstream 47561 8541219 ~ 8549833 (-) True tmem184ba
XM_043253403.1 mRNA downstream 47563 8541219 ~ 8549831 (-) False tmem184ba
XM_043253404.1 mRNA downstream 47565 8541219 ~ 8549829 (-) False tmem184ba
XM_043254241.1 mRNA upstream 5920 8634892 ~ 8636912 (-) True LOC122355698
XM_043254240.1 mRNA upstream 8439 8637411 ~ 8638883 (-) True LOC122355697
XM_043254245.1 mRNA upstream 39424 8668396 ~ 8681985 (-) True kctd17
XM_043254248.1 mRNA upstream 39424 8668396 ~ 8681982 (-) False kctd17
XM_043254247.1 mRNA upstream 39424 8668396 ~ 8681981 (-) False kctd17
XR_006252259.1 other downstream 78285 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 79029 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 237414 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1208484 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1493176 7103880 ~ 7104218 (-) True G86108
XR_006252240.1 other upstream 54080 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 58526 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 246645 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 852587 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 852658 9481630 ~ 9489290 (-) False ormdl3

Expression Profile