RNA id: TU128431


Basic Information

Item Value
RNA id TU128431
length 746
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G86809
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8627094 ~ 8630207 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttcattacatttttcccCATTTCGATTGAATATGCTTAAAGATCTTTATGATAAACAGCCTGACTGTGTAATGGATTTAAGTGTGTGGTGACAGAAAGTACACCATGTTCTGTTTTTTCGGCCTGACCTGATTTGGTGTCTGTTGAGCTAGAGCTGGATGCCATGATTGTGACCACTTCCTCCTCGCACTGATCCAGTTCCATGACTGGCATAAGAGAGATCGCTGGGGCCGTCTTGCTTGTAGAAGTTGTGGATGGTTTTTCATTTGGCAGCTGCAAGGTTTCCTTCTCAACATTTTTTTGCTGACCCTCATCCTCTGCGACAGGAATCCCATTCTCCATCAGAAACTCCTCCAGATCCATGTATTCCAGATGGAAGGTCTCGCCATCATAGGGAATGGTCTTTTCCCAGATGGCAGGCGTTAAGGCAGCCGACGGTCCCATTCCGCTGACCCCTCCAGTGTCCACATCCTCGAAGACTTTCTCTTTATCACTTCGTTGTCATCAATCGAAGGGACAGAGAAGGGATACTCGAGCAGGGATTTAAATATTTCCGGAATTTCTGAAGACATCTCAAACCGGTATCAGTTTCTCAACACCTGGGAAAAGCTTGAATGCAGGAGACGCTTCGACTTACTCCAACTCTCTCTCACATAAAGAGTAGTTTGACCCGCTTGCCACTAAAAATTCTCAAACTTTTTTATTGCGCTCACAAGGTCTGTCGTACCCACAAAGTTACTTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128428 lncRNA downstream 765 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 88888 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 113849 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 282485 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 287279 8339456 ~ 8339815 (-) True G86606
TU128455 lncRNA upstream 45439 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 45439 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 49898 8680105 ~ 8744645 (-) True G86826
TU128502 lncRNA upstream 191673 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 208144 8838351 ~ 8838612 (-) True G86852
XM_043254454.1 mRNA downstream 14633 8611249 ~ 8612461 (-) True cby1
XM_043254453.1 mRNA downstream 15870 8606637 ~ 8611224 (-) True slc16a8
XM_043254384.1 mRNA downstream 20956 8602210 ~ 8606138 (-) True pdap1a
XM_043253682.1 mRNA downstream 26180 8591741 ~ 8600914 (-) True sh3bp1
XM_043253204.1 mRNA downstream 57020 8556275 ~ 8570074 (-) True tnrc6ba
XM_043254241.1 mRNA upstream 4685 8634892 ~ 8636912 (-) True LOC122355698
XM_043254240.1 mRNA upstream 7204 8637411 ~ 8638883 (-) True LOC122355697
XM_043254245.1 mRNA upstream 38189 8668396 ~ 8681985 (-) True kctd17
XM_043254248.1 mRNA upstream 38189 8668396 ~ 8681982 (-) False kctd17
XM_043254247.1 mRNA upstream 38189 8668396 ~ 8681981 (-) False kctd17
TU128398 other downstream 14649 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 107985 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 108729 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 267114 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1238184 7388236 ~ 7388910 (-) True G86203
XR_006252240.1 other upstream 52845 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 57291 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 245410 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 851352 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 851423 9481630 ~ 9489290 (-) False ormdl3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010199 True 1482 mRNA 0.45 5 NC_007123.7 19145845 ~ 19153177 (-)