RNA id: TU128518


Basic Information

Item Value
RNA id TU128518
length 438
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G86858
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8855673 ~ 8856110 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taggtttttattttaacaaggtATGCCAATCTTTTTTCGCGTAAtaataaaggaaattaaaacaTCTAGCAAAATTATTTGCTTGGAGAACAGGCAACTGAAATGAACAATTAAACagagaataaatacaaaagaaattGATACATGTCTAATGATTCGTAAttagaaaaactcaaaactcagATCTAGTGTACAGTGTAATTCGTGCATAATATCATAAATCAACAGTTCATTAAAATGACTGCGAGAACATTCGAAGCTCAAATTAATGCTAAGTTTCCCTTTTTGAAAGAACAGAAAATACAGACGAACGGTGCTCATTCACAGGCCAGTTTGCCATCGAACGAAGACAGAGTTATGGCAAATGCCTGAAGAGCACACATGGGAAAGCTGTAGTCCATGGAAAACACATCTTCAGCTACCCGCCCAAACTGCATC

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128515 lncRNA downstream 132 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 2416 8852945 ~ 8853257 (-) True G86856
TU128510 lncRNA downstream 11899 8843387 ~ 8843774 (-) True G86854
TU128509 lncRNA downstream 14518 8840814 ~ 8841155 (-) True G86853
TU128508 lncRNA downstream 17061 8838351 ~ 8838612 (-) True G86852
TU128525 lncRNA upstream 7331 8863441 ~ 8864263 (-) True G86862
TU128523 lncRNA upstream 11782 8867892 ~ 8869062 (-) True G86861
TU128593 lncRNA upstream 443569 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 455561 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 455591 9311701 ~ 9313528 (-) False thrab
XM_043253325.1 mRNA downstream 3439 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 3439 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 5076 8845111 ~ 8850597 (-) False snx11
XM_043253341.1 mRNA downstream 18416 8832082 ~ 8837257 (-) True LOC122355256
XM_043253372.1 mRNA upstream 13955 8870065 ~ 8872539 (-) True snf8
XM_043253391.1 mRNA upstream 19563 8875673 ~ 8878131 (-) False LOC122355288
XM_043253380.1 mRNA upstream 87001 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 87001 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 418255 9274365 ~ 9281289 (-) True eme1
unassigned_transcript_1920 other downstream 168103 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 168125 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 243228 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 336564 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 337308 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 19507 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 625449 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 625520 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 628836 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 628836 9484946 ~ 9489312 (-) False ormdl3

Expression Profile