RNA id: TU128525


Basic Information

Item Value
RNA id TU128525
length 445
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G86862
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8863441 ~ 8864263 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGATAGGTAAAAGAGAAATGTAGTGATTGTGATTCCTACCTGAGAAAACCACTTGCTGAACAAGCGGTTCAGGGCCGACCTGGTCCAGCCAAGGTTCCACCCATACATAGGTATAATACTTCTGTGCTGAACTCCAACCAACCTGGGCCATGTCAcggatttaatacattttttagagCAATACAAAACAGTAAATACAGCGTGTGCCGTTACTTCTCACACACCTTATAGATACCGATCCAGTCCCTGGGGTTGGGCAGCACATCACCGGTCAGGGTGTAGCGGCAAGTAACTGCGGTGTTTGGCGGATATGATGGAGGAACATCGTTGAAAACTACCTGCGAGTACGACGAGGTCTCCATTATAACTGGGGCCGTCTCTTCCTCCGTTCCGTCGTTCATCCCGGTGTTTctgAACCTCCTTCTGTCGCAGTCCAGACCGCGT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128518 lncRNA downstream 7331 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 7900 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 10184 8852945 ~ 8853257 (-) True G86856
TU128510 lncRNA downstream 19667 8843387 ~ 8843774 (-) True G86854
TU128509 lncRNA downstream 22286 8840814 ~ 8841155 (-) True G86853
TU128523 lncRNA upstream 3629 8867892 ~ 8869062 (-) True G86861
TU128593 lncRNA upstream 435416 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 447408 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 447438 9311701 ~ 9313528 (-) False thrab
TU128629 lncRNA upstream 617367 9481630 ~ 9489290 (-) True ormdl3
XM_043253325.1 mRNA downstream 11207 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 11207 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 12844 8845111 ~ 8850597 (-) False snx11
XM_043253341.1 mRNA downstream 26184 8832082 ~ 8837257 (-) True LOC122355256
XM_043253372.1 mRNA upstream 5802 8870065 ~ 8872539 (-) True snf8
XM_043253391.1 mRNA upstream 11410 8875673 ~ 8878131 (-) False LOC122355288
XM_043253380.1 mRNA upstream 78848 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 78848 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 410102 9274365 ~ 9281289 (-) True eme1
unassigned_transcript_1920 other downstream 175871 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 175893 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 250996 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 344332 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 345076 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 11354 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 617296 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 617367 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 620683 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 620683 9484946 ~ 9489312 (-) False ormdl3

Expression Profile