RNA id: TU128530



Basic Information


Item Value
RNA id TU128530
length 607
RNA type TUCP
GC content 0.39
exon number 5
gene id LOC122355288
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8875617 ~ 8878131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGACCAGTGCGGTTTGCTGTAGATTTGTGCATCAGTTTTAGCCAACATACGGGCCAGAAGCAGAACCATCACAGAACCAGAAAAGTATTAAAGGAGAAATGAAGGTTGCATTTGCACTGGTTTTGATATGCCTGGGCAGTGCGTGGTCATGCGCTGGATCCCAGCCTCTTGATAGCAGCTCACCAAATGAGATCCAGAAGTTTAATCGCCGTTACGCTGAATCAACCATTGCGAGTGACATCAGCAAAATCGTGGATTCGATGGTTCAGAAGAACTTTGTTAACTTTCTGCTCAATCAGAGGGAGAAGAAAAGCGAACCAACTATGGAAGACACCCGCATCTTCAATGACCTGCTGAAAAAAGAGTTTGTGATGTGGATTCAGAGAAAAGGCGATGCATTCAAGAATCAATAACCTGCCTCTAAAGCGTCTTGAAGAACAGACCGGATTCaaaattgatttgaaatgtttagatAATCATTGTAGCCTACTGAGTGTCATCTAAATTATAATGtcttaattacaattaaattgatTTTCAGAATTATAAATTGTGGTTTGTACTTTATTAGCAGAAAATTTTGACATTCTGTAAACATTCACAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128523 lncRNA downstream 6555 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 11354 8863441 ~ 8864263 (-) True G86862
TU128518 lncRNA downstream 19507 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 20076 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 22360 8852945 ~ 8853257 (-) True G86856
TU128593 lncRNA upstream 421567 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 433559 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 433589 9311701 ~ 9313528 (-) False thrab
TU128629 lncRNA upstream 603518 9481630 ~ 9489290 (-) True ormdl3
TU128749 lncRNA upstream 695522 9573634 ~ 9574525 (-) True G87019
XM_043253372.1 mRNA downstream 3078 8870065 ~ 8872539 (-) True snf8
XM_043253325.1 mRNA downstream 23383 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 23383 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 25020 8845111 ~ 8850597 (-) False snx11
XM_043253341.1 mRNA downstream 38360 8832082 ~ 8837257 (-) True LOC122355256
XM_043253380.1 mRNA upstream 64999 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 64999 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 396253 9274365 ~ 9281289 (-) True eme1
XM_043253352.1 mRNA upstream 433541 9311653 ~ 9939849 (-) False thrab
XM_043253351.1 mRNA upstream 433541 9311653 ~ 9407594 (-) False thrab
unassigned_transcript_1920 other downstream 188047 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 188069 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 263172 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 356508 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 357252 8518235 ~ 8518365 (-) True LOC122355888
TU128628 other upstream 603447 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 603518 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 606834 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 606834 9484946 ~ 9489312 (-) False ormdl3
TU129388 other upstream 2164776 11042888 ~ 11045882 (-) True LOC122355648

Expression Profile