RNA id: XM_043253391.1


Basic Information

Item Value
RNA id XM_043253391.1
length 570
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122355288
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8875617 ~ 8878131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCAAAGTACTGTATAAAAGACCAGTGCGGTTTGCTGTAGATTTGTGCATCAGTTTTAGCCAACATACGGGCCAGAAGCAGAACCATCACAGAACCAGAAAAGTATTAAAGGAGAAATGAAGGTTGCATTTGCACTGGTTTTGATATGCCTGGGCAGTGCGTGGTCATGCGCTGGATCCCAGCCTCTTGATAGCAGCTCACCAAATGAGATCCAGAAGTTTAATCGCCGTTACGCTGAATCAACCATTGCGAGTGACATCAGCAAAATCGTGGATTCGATGGTTCAGAAGAACTTTGTTAACTTTCTGCTCAATCAGAGGGAGAAGAAAAGCGAACCAACTATGGAAGACACCCGCATCTTCAATGACCTGCTGAAAAAAGAGTTTGTGATGTGGATTCAGAGAAAAGGCGATGCATTCAAGAATCAATAACCTGCCTCTAAAGCGTCTTGAAGAACAGACCGGATTCaaaattgatttgaaatgtttagatAATCATTGTAGCCTACTGAGTGTCATCTAAATTATAATGtcttaattacaattaaattgatTTTCAGAATTATAAA

Function

GO:

id name namespace
GO:0042594 response to starvation biological_process
GO:0031769 glucagon receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128523 lncRNA downstream 6611 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 11410 8863441 ~ 8864263 (-) True G86862
TU128518 lncRNA downstream 19563 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 20132 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 22416 8852945 ~ 8853257 (-) True G86856
TU128593 lncRNA upstream 421548 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 433540 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 433570 9311701 ~ 9313528 (-) False thrab
TU128629 lncRNA upstream 603499 9481630 ~ 9489290 (-) True ormdl3
TU128749 lncRNA upstream 695503 9573634 ~ 9574525 (-) True G87019
XM_043253372.1 mRNA downstream 3134 8870065 ~ 8872539 (-) True snf8
XM_043253325.1 mRNA downstream 23439 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 23439 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 25076 8845111 ~ 8850597 (-) False snx11
XM_043253341.1 mRNA downstream 38416 8832082 ~ 8837257 (-) True LOC122355256
XM_043253380.1 mRNA upstream 64980 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 64980 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 396234 9274365 ~ 9281289 (-) True eme1
XM_043253352.1 mRNA upstream 433522 9311653 ~ 9939849 (-) False thrab
XM_043253351.1 mRNA upstream 433522 9311653 ~ 9407594 (-) False thrab
unassigned_transcript_1920 other downstream 188103 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 188125 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 263228 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 356564 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 357308 8518235 ~ 8518365 (-) True LOC122355888
TU128628 other upstream 603428 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 603499 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 606815 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 606815 9484946 ~ 9489312 (-) False ormdl3
TU129388 other upstream 2164757 11042888 ~ 11045882 (-) True LOC122355648

Expression Profile