RNA id: TU128592


Basic Information

Item Value
RNA id TU128592
length 236
lncRNA type sense_over
GC content 0.54
exon number 2
gene id pkd1b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9285663 ~ 9306831 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTTCTTCAGTGTTGATGAGAGGCGCTGGAGCAGTGACGGCTTGAGTCCTCTGAGCGGCAGCAGCCCACACACTGCCCACTGCCTCACACACCACCTCACCATGTTTGGAGCCAGCCTCTTCATCCATCCTGATGCACTTCTACTGCTGCCACCTTCAGAGGAGCCAGTGAAAAACGTGGTGGTGGGAATAGTTTGTGGAGTCTTGCTGTTAATTCATCTGCTGCTTGGTCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128342 lncRNA upstream 422815 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 424725 8873327 ~ 8873545 (+) True G86756
TU128273 lncRNA upstream 612153 8682389 ~ 8686117 (+) True G86713
TU128123 lncRNA upstream 953302 8344669 ~ 8344968 (+) True G86593
TU128088 lncRNA upstream 1006208 8291843 ~ 8292062 (+) True G86577
TU128622 lncRNA downstream 182736 9481585 ~ 9485156 (+) False G86943
TU128623 lncRNA downstream 182736 9481585 ~ 9487179 (+) True G86943
TU128656 lncRNA downstream 297444 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 297444 9596293 ~ 9600682 (+) False G86959
XR_006252201.1 lncRNA downstream 311444 9610293 ~ 9616636 (+) True LOC122355291
XM_043253389.1 mRNA upstream 15190 9281191 ~ 9283080 (+) True mrpl27
XM_043253365.1 mRNA upstream 56778 9118929 ~ 9241492 (+) True ca10a
XM_043253305.1 mRNA upstream 355237 8896217 ~ 8943033 (+) False caskin2
XM_043253302.1 mRNA upstream 355237 8896220 ~ 8943033 (+) False caskin2
XM_043253300.1 mRNA upstream 355237 8896221 ~ 8943033 (+) True caskin2
XM_043253359.1 mRNA downstream 199727 9498576 ~ 9521662 (+) True wnt3
XM_043253309.1 mRNA downstream 260831 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA downstream 261210 9560059 ~ 9575720 (+) True hdlbpb
XM_043253295.1 mRNA downstream 323954 9622803 ~ 9635117 (+) True polr2a
XM_043253364.1 mRNA downstream 337624 9636473 ~ 9644761 (+) True capgb
XR_006252198.1 other upstream 445821 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 592939 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1454187 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 1990041 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 1993422 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 458424 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 572815 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 1182766 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 1188771 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1243380 10542229 ~ 10581755 (+) False svila

Expression Profile