RNA id: TU128617


Basic Information

Item Value
RNA id TU128617
length 1828
lncRNA type sense_over
GC content 0.43
exon number 1
gene id thrab
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9311653 ~ 9939849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTTTATTGAGTGCACACGGAGATCAGACCCGCAATCAGACCTGTCTCCAGGGCttggtttattgtttaaagTGGGTAGGGGAAACTGAAGTGATACGGTACTTGATTTCTCAGATATAACTTTACCCACAAAACCAAATGTCGTTCCAAGTACATTTTGCACTAGAGTTCTGCAGTTTGGTCGGGTTTTGAGATTAGACATGCTGGTGAGGTTATGCCTTGAGAACATGGTGTTTGTAGAGTCATCTCTAAAAAGGTTATGCATGGACAGCAAGGAATGTATCTCGCCAAACATAAGGACGCTTAAGGAATGACCTCACATAGATTATGCAATAAAACAGCTACGCGTTTGTCAGGTTTTCAGGCGAGTGGTTTGAGTGTGGGCTTGCTCAGGTTTGCTCATAAGGCCTCAAAGGGTGCTTCAGTCGAACCTCCCCGTTTCCTTCCCAGCTCTCCAGCATCTGTGCTGGTTCCTACAGGACATAAACCCTGCTTGCACACTGGATGATTTGCATGcatgattattaaataacaataaatgagaTTTACAGTGCGGGGGGGCCCTTTCTGCCAAGATATTTCCAGTACTGTGCTTCTGGACATTTGAACATTCTGCAAAATTAGTTTGCGATCCAGGTGCAAACAAAAGGGTTCATGTCTTTACTATCTCTCTCTATTCCAGCTAGCACTCCCTTTGGGCTCTAAATTACATGTGCATGTCTGTTTTTGCTGTCATGTTTGCTCTGCTTTTGCTAGTTTTCCGTCTCAGTGGTCCACTGGCCACATGCCACAGTTTCCATATGTTCAGCTGCTCTTGGATGATGTACCTGATACGTAGGCCCAAACACAAcctgcacattttatttactaattttggggggaaatatgcgtaatagattttaaatagGGTAAGATGTGTTAAATGGAGCCAAATTCGGCAGTTGAAAGCGAAACATCCCAAATATTGAATACATTCGATTTGTGTGGGCTTACAGGTACgaactgaaaaatgcaaaaatgtatccaaatttaaatgtgtttatgcaaATTGTTTGTATAGTATTGTTTACTGTTGACACAGACATTGTGCAAATGGTGCATTTGTGGTTTGTGGATGAGGAAAAAAAGTAGCCTAAATATTTCTAGCTTCACTGTGATCAAATCTCGCATCACATTTTTACAGTCTGCAGTCACTCAGGAGTCCTAACCAATCAGAGGCCAGCTAACAAATGATTTGCTGAAAGAGCTGGAGATGTCGGACTACACCTCGTTATAATTGTACTGGGTCTTGAGGAATCTAGTCGCATCGCTCGGATGCAGCTAAAGATGTACGGTGAGGCTGGAGTGCAggaaattgatcaaatgtgaagCTGCTTCGCAGTAGCGTTCAATACAGAGTTGGGCAGATAATGTTCTGAGAGTCTCGGCACGGCATGTTTCAACGTTCAGCTGATTGGACCAGGTTCAGGAAGTCTTTAGGATCCATTCTCCAACTAGTGTGGAGGAGCAGGAAAGCTTATGCAAGCTCTGGGCCAAATGGACACGTGTAACTCAGAATATCTCAACAAGAATACACTCAAAACCTCTAAATATCTACTGTGATCTCCTCTCACTCCACCACACCTCCATCACGCCAACCACCCGTTCACCCCCCTGCGCCTATCCTAGTCCTAGTTTTTTGGGTGGTGTGATGTCAGGTTTTCTTGTGGTGGGCTGTTTTCGACAGGTCCAGACAATCAGCGTGTTTGTCAATGTCAATGTGTGATTTTCAAACTCTTTGTTTATGGTCAGGATTttaaaggaagatatttttatggTAATTGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128593 lncRNA downstream 11802 9299679 ~ 9299899 (-) True G86916
TU128523 lncRNA downstream 442639 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 447438 8863441 ~ 8864263 (-) True G86862
TU128518 lncRNA downstream 455591 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 456160 8855329 ~ 8855541 (-) True G86857
TU128629 lncRNA upstream 168102 9481630 ~ 9489290 (-) True ormdl3
TU128749 lncRNA upstream 260106 9573634 ~ 9574525 (-) True G87019
TU128768 lncRNA upstream 318516 9632044 ~ 9635117 (-) True G87034
TU128795 lncRNA upstream 449574 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 606659 9920187 ~ 9939849 (-) False thrab
XM_043253326.1 mRNA downstream 30412 9274365 ~ 9281289 (-) True eme1
XM_043253380.1 mRNA downstream 364883 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA downstream 365381 8943111 ~ 8946320 (-) True nme2a
XM_043253391.1 mRNA downstream 433570 8875673 ~ 8878131 (-) False LOC122355288
XM_043253372.1 mRNA downstream 439162 8870065 ~ 8872539 (-) True snf8
XM_043253385.1 mRNA upstream 168031 9481559 ~ 9489311 (-) False ormdl3
XM_043253384.1 mRNA upstream 168031 9481559 ~ 9489311 (-) False ormdl3
XM_043253383.1 mRNA upstream 168031 9481559 ~ 9489310 (-) False ormdl3
XM_043253386.1 mRNA upstream 168031 9481559 ~ 9489020 (-) False ormdl3
XM_043253387.1 mRNA upstream 171411 9484939 ~ 9489312 (-) False ormdl3
TU128530 other downstream 433589 8875617 ~ 8878112 (-) True LOC122355288
unassigned_transcript_1920 other downstream 624131 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 624153 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 699256 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 792592 8518980 ~ 8519109 (-) True LOC122355887
TU128628 other upstream 168031 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 168102 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 171418 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 171418 9484946 ~ 9489312 (-) False ormdl3
TU129388 other upstream 1729360 11042888 ~ 11045882 (-) True LOC122355648

Expression Profile