RNA id: TU128629


Basic Information

Item Value
RNA id TU128629
length 5829
lncRNA type read_through
GC content 0.39
exon number 4
gene id ormdl3
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9481559 ~ 9489312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTGAAACGATGAAGTCTCGCTGTGTTGTCACCATCTGTTTGCACGGGAacaaagtgcttcaaagcaaaCATCATGAAATAAACAGACGTGTCAAGTTTCGAAAAACGGCAAGGCTGCGTTGCACAAGGATCCCAGACCCGAAGATATCCCGATAACGTTTGCGAAACGTTAAACAGCGCTGTACTATTTTACGTAAGTACGTACTGCGAAGTTTCTGCGTGATTTGTGAAGAGTCTTGCGCAATATTGTACATAAGTGCGCAATAGTAGAGAGTCCCTCTGCGCGAGGATGAACGTGGGCACGGCGCACAGTGAGGTCAATCCAAACACGCGAGTGATGAACAGCAGGGGTATATGGCTCTCGTATGTGCTTGGCATCGGCCTCCTGCACATCATATTGCTCAGCATACCGTTCGTCAGCGTTCCTGTGGTCTGGACGCTCACCAACCTCATCCACAACTTGTGCATGTATATCTTCCTGCACACGGTAAAAGGAACGCCGTTTGAGACTCCAGACCAAGGCAAGGCCCGGCTTCTGACCCACTGGGAACAGATGGACTACGGGGTCCAGTTCACCGCCTCTCGAAAGTTTCTCACCATCACCCCTATTATACTCTCTGAGAAGGCTTTCACAGCTTGCTCTGCATGACCATGAGCAAGAGGCAGTGATGCTGACTTCCTGTGGTGTCTTCTGGCAAGGAGAGCCGGATTTAGAAACAgttagtcagtcagtcaggtCATTTGCTCTactcttttcttctctctcggGTCTTCTCCTTTCATATTGTGAGGGTGTATCTGTTGGTTACAGTGAGGGATGAGGTACTGCAGTACTTACTGGTAACACGAAACGGAACCTCAAACAGGACCTTTTATTCTAAAATGtgcttgcatttaaaataaaattgtgaaattttgatgtattttcGAGTTTCACAAGATATTTGACGGGGAGAAAAAGTAAGTGAGACTTCCTTGCTGACAAAACCAGCACCAGCCGGCCAGTTGCATAAACTTAGCCATAAACAGTTGCATAAAAAGTGTCTTAAGAGCTAATCTGACCGACTAGCAGTTGAGtaatcaattttatattttggaatcaactacatttttatgtaactgtataaaaaaaactatgaccAGTCTTAAAGAATAATTAGCTGACTAACTGACTAACTAACCCAATCGGCCCTTGGGTTCACTGGTTATAGCTTGTGTAAGTTTGTCTAAGGTAGTCTAGTTGGATTGCTAACCTGGCCAAACTGGTATTTAGGAGCAGAAACGTACTTCAGACCCCTCtagaacaattttattttagtattatttctgTACTATTACAGTGTTAACTGATATTTCAAGCTAGTTTTAATTGccatattttctattattttgttatttaggTTAAAAGTGAACTTCAACTTCAACTACAGTTATTTTCCCAAAGgcaattttgttttttcatctaatatttgcAGTTTAATTTCTTAcagcattatataatttaatatagttagatagtaacaacaacaaaaggtaGATTCTGAAAGAGTGCCTGAATAACCATTTGACTATTGGTTCATTTTGCAATAACAACTTACTGGATGTATATTATCCTGCTTATTACACAGCTACTTTCTACATACATAAATAGTTAGACATAAAAAATTGATTTGAGTTATAATTTATTAGCTCTTTATATGCAAAACGTCTGAAAATATTTCCCAACAAACAGCTTTGAGCCCAAATGAAGTTCAGACAAGATGGACATAATATACAGTCCTATCACTAAATTGCACTACTTTTTACCATAAATATAGGGACAAGGACATTAAATGTTGCTTGAGAACAAAGCGATTTGAAATCGAATCCATTACAAAATTCAGAACGTTGGGAAGAAGTAAAACACTTTAATACTCTTAATACTGAAGTCTGCTggtttcattttacagtaaatacagttgATAACCGAGGTTCAAGATGGTAACAGTTGCGTTTGAATGAAATGACCAAAGCACCACCCTCTTATAACCCTGATGTATGTTATTTGCTGATGCTCAATGAGGAAAAACATTTATCCATAGAGCCGtgtaaaaacgttttttctttACTATTGCATGCACTATATTATAAACGTTCATTAAGAAAGTAACTACATCTCTTTTTATGTTCatctgattttatattaatcaGATTCATCTTTTTGCATACAGTATATGCCTGAAAAGCATACTGTTGCGGCATGAAGAAACCACATCCTGTGTTTTAATAGAGGCATTCTTGTGCTGTGCTTGCTTGAGCAACTTCTGTAACCTCTGCATCTGTGCATCTCATGTTGATACCTGACATCTGACTTGTCCTTGTCCTTGTCCTCTACAGGTATTTCCTGACCAGTTTCTATACAAAGTATGACAGGGTCCACTTTGTCATCAACACCATTTCCCTGCTCACTGTGCTTATTCCCAAACTGCCTCAGTTCCACGGGGTCCGTCTCTTTGGAATTAATAAGTACTGACGAGGCTTTGATCTTTAACACAAGAGGATGTGTGGCCACTTACTCTCCGGGAATAAAAAAGGGGGAAATGTAGAGCTTCGTTGGATGCTCTGCTGCTTTGCGGTCAAAGCGGCCGAACAGTCTGCTATGGTAtcatttttattgatgttttttgtaTGACATTCAGTAGATACAAACACGTTTGTAGAACCACCAGCAGAATGAAGGTCAGGACGAAACAGACAGTGTTGGTTAAGAGTGTTAGGTACGCTATTGGGAACCTTGTGTTAGATTTCAGTCGATTTGGCAGAAATGCTGCATTGATGCAGTGAATCAGATGGGTCAAAATAGGCTGATTCTTAACTGAGTCAGCACGACCCAATGTTCAGCACAAGGTGtttagaaagagaaaaaaggtaCTGTGTTTCTGAAGAAAGCGTACAAGGATATTTTTAGCACAGGTGCTAAAGACTGGCTTCCATCGTATAGTTGGACAGCATCATCATCTCAACTTTTGCCAGACTTGTATTTcatgattttagattttaaacaaaactagttaaattttatatatgcacaagctattaaaatattttatatgtcatTTTCAGGGCCCTAAAAGTCTCAAACCTCTGGCTCTttttataacatgcatttaatattgaGTAATAAAAAATAGCTAGTTGGCTGCATGTAAACCCATAGAAGAGTGGCTTCTGATGGGAAGAACCGGTGCAAGGGAATATTggattcaatctttttttttttatccctagAAAGAAACTGTAGTTTAACTGTACATATGACCTTTGGACCGTGATCTGTCTCTTTGGACTCTTGTGTACAACTCCTGAACTACATGTGCAGGTCTGAGTGaggataaattaaatgttaatacacTTTGCCGAGGTACAGAATATTTCTGTGAAGCATCATCATGTAAATAAGATGTGTAAGTGCATTCGTTTCAGTGTGTGTCTCACAAAGGCAATTTAAAGAAACCTATCTGTCACAGCACATACAGATCTACAAACCTACAGATTTTAGGTAGTTTATGCATTTTGCCTGTGAACAGCAGTATGGACTGATGACAGGCTCTGTGATGTGATCTTGCATGACAGCACTATAATGAGCTTAATgcctaattattaatatatttcttaatttttgtaCCAAAAAGTTATGTTGGAATGATGTATGGTCTGTGACTTACCCTGCGGACGTATACCTAGAACTTACCAAGCAAGATTCTCAATAGGTTGCTTTTCTAATACAGCATTTCGTTTGTCATATTTAGTAGCAGTTTTATTATATCAGTGTCTCAGTCATGCTCAGTGTGGAGTATTGTTTTATCGCTGCCCTCTCTTCAGTTTGCGATAACACAATTGTGAAACATAATCCTGCATACGTGGAGCAATGCCTTATCTAGCAGATCACTTGACCTTGTTCTATATTTGTCCCTTATATTAGATACGCTTGTTTATTGTTGATGTGATCAGAATTTGCAATAAGACATattattacagaaaatgtattttgcaaaTCGCTTTATTACAGTTGACGATTACTTCATAATTGATTTGTCGACGGGGTACATTTCGCAGTTGTGTTTAATGCAATTGCACATCAGCATTGTGACAGGGCTGATattatgtgaatttttttttacttttgagcTTGTTCCTTCACCAGCATGGCTTCAGTTCTCATCCTTTGCAgatgttttgtttcttgttcGACTGGCTTCATCAGTTGGAGTTAATGGGACGTTCCCTGAAATTACGTTTTGTCCCGTGTTGTACATTTACACCGCTATTCAATCACGTTTAATCTTTTGTTGCGAAGTTAAGCATTGAGTCTTCATATTTTGGGAACTGTAGGAACAGCAGCCCCTGCTTTGAGAATATGTCGTGTTGTGGTAATCTGAAGCGTTGCGTAGCGTGCTGTATCTTATCACCTGGCAGGATGCTGATAATCAGGGTTCGTGCCGAGTGATACCAGAGGCTTTCTTTCTGTTATGGTCACGTACAATGTCTTTCAGTTGCTGCAAATTGTCAGTTGTAGTGCTGTTCTGCCATCACTTGTTTGACATTTTCTCCTGTTTACATTCACACAGTTATTGTGAATGACAGTGACTCCATTAGAAATTCACTAGCTGCGCAAGGTTAAATAGCAGGGATAATCTTATCCTGTGACCGATGAAGCGTATTCATCAGTTAATGTGAAACAATGCACAGTAATGAATGAACCCTACGTGGCTTTTTACCGCGAGCCAGATGAATTTAAAATAGCCtatgaatttaaaatagatCAAGCCAGGAAACTGGCATCGATGTCCTATAgtttaaagcaacagttcagccaaaaatgtaaattctgtcatcattttctcaccctggagtagttccaaatctgaaTGGATTCATTTGTTCTGcctaaaaacaaagatatttttaagaaagtttgtaacctgactgttttgggtcaccattgacttttattattattattattattattattattattattattattattatggaagtcaatggtgacccaaaacagcctggttataaACTTCAAAGTATCTTccagaacaaattaataaacacagatttggaactactcaaatattgagttttcatttttttgggtgaactattcctttaacgaACGAGGAAAAAGACAGCGATGATATAAAGCAAGCACCACACCAGTATTCCAGTGTGCAATGTGAGCCAGGGCCGTGCTCTTGGGGTTGTTACCCAAAGCCAGCAACTTTTTAAACATTGACTGGGTGAGAGTCCATCAGAATAGGCGAGAGTGAGGCCTCATGTGTCAGTGTCAGTTCTCCATTACTAGTTGCAGCCTGTGTAAGCTGTCTATCACCTTGTCAACCCATCTCTCCATTCAGTCAGCACATCCATTCTCAAACGTCAGGTGTTTCCTTCCTTTTGCACACATTCTACCGTGCTTTACCTGCTTTGTTGCACTAGCATAATTTCGTATGACCACCCCTCCCCTCCCAGATCGtatgtgtttcattattaaacattgtatgcaatggttttatatttattgtattacaaCATCATCAGCCCTGAAAAGCCTGCACCTGCAGTGTGTAATAGTATCAAATCATATTTGCACAAAGGGCTATTGTCAACAGGACCAAGTCACACTGAAGCTGACTGTTCTTCacttttgagaatttttttgtaGACATTAATTTGGTATGCAGTATTGTGGATATGTACACTACGTTTCAAAGGTTTGAAGGAttggtaaggttttttttaatgtttgaaaaaaggCTCATATGTTTACTAAagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128616 lncRNA downstream 167932 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA downstream 168102 9311701 ~ 9313528 (-) False thrab
TU128593 lncRNA downstream 181731 9299679 ~ 9299899 (-) True G86916
TU128523 lncRNA downstream 612568 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 617367 8863441 ~ 8864263 (-) True G86862
TU128749 lncRNA upstream 84344 9573634 ~ 9574525 (-) True G87019
TU128768 lncRNA upstream 142754 9632044 ~ 9635117 (-) True G87034
TU128795 lncRNA upstream 273812 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 430897 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 871587 10360877 ~ 10361414 (-) True G87104
XM_043253351.1 mRNA downstream 74036 9311653 ~ 9407594 (-) False thrab
XM_043253353.1 mRNA downstream 114913 9311653 ~ 9366717 (-) False thrab
XM_043253354.1 mRNA downstream 144533 9311653 ~ 9337097 (-) True thrab
XM_043253326.1 mRNA downstream 200341 9274365 ~ 9281289 (-) True eme1
XM_043253380.1 mRNA downstream 534812 8943111 ~ 8946818 (-) False nme2a
XM_043253318.1 mRNA upstream 34996 9524286 ~ 9543828 (-) False nsfb
XM_043253317.1 mRNA upstream 34996 9524286 ~ 9543828 (-) False nsfb
XM_043253316.1 mRNA upstream 34996 9524286 ~ 9543828 (-) True nsfb
XM_043253314.1 mRNA upstream 55977 9545267 ~ 9558906 (-) True arhgef15b
XM_043253315.1 mRNA upstream 55977 9545267 ~ 9557693 (-) False arhgef15b
TU128530 other downstream 603518 8875617 ~ 8878112 (-) True LOC122355288
unassigned_transcript_1920 other downstream 794060 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 794082 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 869185 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 962521 8518980 ~ 8519109 (-) True LOC122355887
TU129388 other upstream 1553598 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1832133 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2343589 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2459981 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 3160093 12649383 ~ 12675472 (-) False prr15lb

Expression Profile