RNA id: XM_043253385.1


Basic Information

Item Value
RNA id XM_043253385.1
length 4104
RNA type mRNA
GC content 0.40
exon number 4
gene id ormdl3
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9481559 ~ 9489312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGAGTTCTGAAAAATGATGACGTGAAACGATGAAGTCTCGCTGTGTTGTCACCATCTGTTTGCACGGGAacaaagtgcttcaaagcaaaCATCATGAAATAAACAGACGTGTCAAGTTTCGAAAAACGGCAAGGCTGCGTTGCACAAGGATCCCAGACCCGAAGATATCCCGATAACGTTTGCGAAACGTTAAACAGCGCTGTACTATTTTACGTAATAAGTGCGCAATAGTAGAGAGTCCCTCTGCGCGAGGATGAACGTGGGCACGGCGCACAGTGAGGTCAATCCAAACACGCGAGTGATGAACAGCAGGGGTATATGGCTCTCGTATGTGCTTGGCATCGGCCTCCTGCACATCATATTGCTCAGCATACCGTTCGTCAGCGTTCCTGTGGTCTGGACGCTCACCAACCTCATCCACAACTTGTGCATGTATATCTTCCTGCACACGGTAAAAGGAACGCCGTTTGAGACTCCAGACCAAGGCAAGGCCCGGCTTCTGACCCACTGGGAACAGATGGACTACGGGGTCCAGTTCACCGCCTCTCGAAAGTTTCTCACCATCACCCCTATTATACTGTATTTCCTGACCAGTTTCTATACAAAGTATGACAGGGTCCACTTTGTCATCAACACCATTTCCCTGCTCACTGTGCTTATTCCCAAACTGCCTCAGTTCCACGGGGTCCGTCTCTTTGGAATTAATAAGTACTGACGAGGCTTTGATCTTTAACACAAGAGGATGTGTGGCCACTTACTCTCCGGGAATAAAAAAGGGGGAAATGTAGAGCTTCGTTGGATGCTCTGCTGCTTTGCGGTCAAAGCGGCCGAACAGTCTGCTATGGTAtcatttttattgatgttttttgtaTGACATTCAGTAGATACAAACACGTTTGTAGAACCACCAGCAGAATGAAGGTCAGGACGAAACAGACAGTGTTGGTTAAGAGTGTTAGGTACGCTATTGGGAACCTTGTGTTAGATTTCAGTCGATTTGGCAGAAATGCTGCATTGATGCAGTGAATCAGATGGGTCAAAATAGGCTGATTCTTAACTGAGTCAGCACGACCCAATGTTCAGCACAAGGTGtttagaaagagaaaaaaggtaCTGTGTTTCTGAAGAAAGCGTACAAGGATATTTTTAGCACAGGTGCTAAAGACTGGCTTCCATCGTATAGTTGGACAGCATCATCATCTCAACTTTTGCCAGACTTGTATTTcatgattttagattttaaacaaaactagttaaattttatatatgcacaagctattaaaatattttatatgtcatTTTCAGGGCCCTAAAAGTCTCAAACCTCTGGCTCTttttataacatgcatttaatattgaGTAATAAAAAATAGCTAGTTGGCTGCATGTAAACCCATAGAAGAGTGGCTTCTGATGGGAAGAACCGGTGCAAGGGAATATTggattcaatctttttttttttatccctagAAAGAAACTGTAGTTTAACTGTACATATGACCTTTGGACCGTGATCTGTCTCTTTGGACTCTTGTGTACAACTCCTGAACTACATGTGCAGGTCTGAGTGaggataaattaaatgttaatacacTTTGCCGAGGTACAGAATATTTCTGTGAAGCATCATCATGTAAATAAGATGTGTAAGTGCATTCGTTTCAGTGTGTGTCTCACAAAGGCAATTTAAAGAAACCTATCTGTCACAGCACATACAGATCTACAAACCTACAGATTTTAGGTAGTTTATGCATTTTGCCTGTGAACAGCAGTATGGACTGATGACAGGCTCTGTGATGTGATCTTGCATGACAGCACTATAATGAGCTTAATgcctaattattaatatatttcttaatttttgtaCCAAAAAGTTATGTTGGAATGATGTATGGTCTGTGACTTACCCTGCGGACGTATACCTAGAACTTACCAAGCAAGATTCTCAATAGGTTGCTTTTCTAATACAGCATTTCGTTTGTCATATTTAGTAGCAGTTTTATTATATCAGTGTCTCAGTCATGCTCAGTGTGGAGTATTGTTTTATCGCTGCCCTCTCTTCAGTTTGCGATAACACAATTGTGAAACATAATCCTGCATACGTGGAGCAATGCCTTATCTAGCAGATCACTTGACCTTGTTCTATATTTGTCCCTTATATTAGATACGCTTGTTTATTGTTGATGTGATCAGAATTTGCAATAAGACATattattacagaaaatgtattttgcaaaTCGCTTTATTACAGTTGACGATTACTTCATAATTGATTTGTCGACGGGGTACATTTCGCAGTTGTGTTTAATGCAATTGCACATCAGCATTGTGACAGGGCTGATattatgtgaatttttttttacttttgagcTTGTTCCTTCACCAGCATGGCTTCAGTTCTCATCCTTTGCAgatgttttgtttcttgttcGACTGGCTTCATCAGTTGGAGTTAATGGGACGTTCCCTGAAATTACGTTTTGTCCCGTGTTGTACATTTACACCGCTATTCAATCACGTTTAATCTTTTGTTGCGAAGTTAAGCATTGAGTCTTCATATTTTGGGAACTGTAGGAACAGCAGCCCCTGCTTTGAGAATATGTCGTGTTGTGGTAATCTGAAGCGTTGCGTAGCGTGCTGTATCTTATCACCTGGCAGGATGCTGATAATCAGGGTTCGTGCCGAGTGATACCAGAGGCTTTCTTTCTGTTATGGTCACGTACAATGTCTTTCAGTTGCTGCAAATTGTCAGTTGTAGTGCTGTTCTGCCATCACTTGTTTGACATTTTCTCCTGTTTACATTCACACAGTTATTGTGAATGACAGTGACTCCATTAGAAATTCACTAGCTGCGCAAGGTTAAATAGCAGGGATAATCTTATCCTGTGACCGATGAAGCGTATTCATCAGTTAATGTGAAACAATGCACAGTAATGAATGAACCCTACGTGGCTTTTTACCGCGAGCCAGATGAATTTAAAATAGCCtatgaatttaaaatagatCAAGCCAGGAAACTGGCATCGATGTCCTATAgtttaaagcaacagttcagccaaaaatgtaaattctgtcatcattttctcaccctggagtagttccaaatctgaaTGGATTCATTTGTTCTGcctaaaaacaaagatatttttaagaaagtttgtaacctgactgttttgggtcaccattgacttttattattattattattattattattattattattattattattatggaagtcaatggtgacccaaaacagcctggttataaACTTCAAAGTATCTTccagaacaaattaataaacacagatttggaactactcaaatattgagttttcatttttttgggtgaactattcctttaacgaACGAGGAAAAAGACAGCGATGATATAAAGCAAGCACCACACCAGTATTCCAGTGTGCAATGTGAGCCAGGGCCGTGCTCTTGGGGTTGTTACCCAAAGCCAGCAACTTTTTAAACATTGACTGGGTGAGAGTCCATCAGAATAGGCGAGAGTGAGGCCTCATGTGTCAGTGTCAGTTCTCCATTACTAGTTGCAGCCTGTGTAAGCTGTCTATCACCTTGTCAACCCATCTCTCCATTCAGTCAGCACATCCATTCTCAAACGTCAGGTGTTTCCTTCCTTTTGCACACATTCTACCGTGCTTTACCTGCTTTGTTGCACTAGCATAATTTCGTATGACCACCCCTCCCCTCCCAGATCGtatgtgtttcattattaaacattgtatgcaatggttttatatttattgtattacaaCATCATCAGCCCTGAAAAGCCTGCACCTGCAGTGTGTAATAGTATCAAATCATATTTGCACAAAGGGCTATTGTCAACAGGACCAAGTCACACTGAAGCTGACTGTTCTTCacttttgagaatttttttgtaGACATTAATTTGGTATGCAGTATTGTGGATATGTACACTACGTTTCAAAGGTTTGAAGGAttggtaaggttttttttaatgtttgaaaaaaggCTCATATGTTTACTAAagctggatttatttgatcataaatactgtaaatgtcatgttacaaattattattaaatattattacaatttaaaa

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0035339 SPOTS complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128616 lncRNA downstream 167861 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA downstream 168031 9311701 ~ 9313528 (-) False thrab
TU128593 lncRNA downstream 181660 9299679 ~ 9299899 (-) True G86916
TU128523 lncRNA downstream 612497 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 617296 8863441 ~ 8864263 (-) True G86862
TU128749 lncRNA upstream 84323 9573634 ~ 9574525 (-) True G87019
TU128768 lncRNA upstream 142733 9632044 ~ 9635117 (-) True G87034
TU128795 lncRNA upstream 273791 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 430876 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 871566 10360877 ~ 10361414 (-) True G87104
XM_043253351.1 mRNA downstream 73965 9311653 ~ 9407594 (-) False thrab
XM_043253353.1 mRNA downstream 114842 9311653 ~ 9366717 (-) False thrab
XM_043253354.1 mRNA downstream 144462 9311653 ~ 9337097 (-) True thrab
XM_043253326.1 mRNA downstream 200270 9274365 ~ 9281289 (-) True eme1
XM_043253380.1 mRNA downstream 534741 8943111 ~ 8946818 (-) False nme2a
XM_043253318.1 mRNA upstream 34975 9524286 ~ 9543828 (-) False nsfb
XM_043253317.1 mRNA upstream 34975 9524286 ~ 9543828 (-) False nsfb
XM_043253316.1 mRNA upstream 34975 9524286 ~ 9543828 (-) True nsfb
XM_043253314.1 mRNA upstream 55956 9545267 ~ 9558906 (-) True arhgef15b
XM_043253315.1 mRNA upstream 55956 9545267 ~ 9557693 (-) False arhgef15b
TU128530 other downstream 603447 8875617 ~ 8878112 (-) True LOC122355288
unassigned_transcript_1920 other downstream 793989 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 794011 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 869114 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 962450 8518980 ~ 8519109 (-) True LOC122355887
TU129388 other upstream 1553577 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1832112 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2343568 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2459960 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 3160072 12649383 ~ 12675472 (-) False prr15lb

Expression Profile