RNA id: XR_006252199.1


Basic Information

Item Value
RNA id XR_006252199.1
length 835
RNA type transcript
GC content 0.49
exon number 5
gene id ormdl3
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9481559 ~ 9489312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTGAGTTCTGAAAAATGATGACGTGAAACGATGAAGTCTCGCTGTGTTGTCACCATCTGTTTGCACGGGAacaaagtgcttcaaagcaaaCATCATGAAATAAACAGACGTGTCAAGTTTCGAAAAACGGCAAGGCTGCGTTGCACAAGGATCCCAGACCCGAAGATATCCCGATAACGTTTGCGAAACGTTAAACAGCGCTGTACTATTTTACTAAGTGCGCAATAGTAGAGAGTCCCTCTGCGCGAGGATGAACGTGGGCACGGCGCACAGTGAGGTCAATCCAAACACGCGAGTGATGAACAGCAGGGGTATATGGCTCTCGTATGTGCTTGGCATCGGCCTCCTGCACATCATATTGCTCAGCATACCGTTCGTCAGCGTTCCTGTGGTCTGGACGCTCACCAACCTCATCCACAACTTGTGCATGTATATCTTCCTGCACACGGTAAAAGGAACGCCGTTTGAGACTCCAGACCAAGGCAAGGCCCGGCTTCTGACCCACTGGGAACAGATGGACTACGGGGTCCAGTTCACCGCCTCTCGAAAGTTTCTCACCATCACCCCTATTATACTCTCTGAGAAGGCTTTCACAGCTTGCTCTGCATGACCATGAGCAAGAGGCAGTGATGCTGACTTCCTGTGGTGTCTTCTGGCAAGGAGAGCCGGATTTAGAAACAgttagtcagtcagtcagGTATTTCCTGACCAGTTTCTATACAAAGTATGACAGGGTCCACTTTGTCATCAACACCATTTCCCTGCTCACTGTGCTTATTCCCAAACTGCCTCAGTTCCACGGGGTCCGTCTCTTTGGAATTAATAAGTACTGA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0035339 SPOTS complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128616 lncRNA downstream 171248 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA downstream 171418 9311701 ~ 9313528 (-) False thrab
TU128593 lncRNA downstream 185047 9299679 ~ 9299899 (-) True G86916
TU128523 lncRNA downstream 615884 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 620683 8863441 ~ 8864263 (-) True G86862
TU128749 lncRNA upstream 84322 9573634 ~ 9574525 (-) True G87019
TU128768 lncRNA upstream 142732 9632044 ~ 9635117 (-) True G87034
TU128795 lncRNA upstream 273790 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 430875 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 871565 10360877 ~ 10361414 (-) True G87104
XM_043253351.1 mRNA downstream 77352 9311653 ~ 9407594 (-) False thrab
XM_043253353.1 mRNA downstream 118229 9311653 ~ 9366717 (-) False thrab
XM_043253354.1 mRNA downstream 147849 9311653 ~ 9337097 (-) True thrab
XM_043253326.1 mRNA downstream 203657 9274365 ~ 9281289 (-) True eme1
XM_043253380.1 mRNA downstream 538128 8943111 ~ 8946818 (-) False nme2a
XM_043253318.1 mRNA upstream 34974 9524286 ~ 9543828 (-) False nsfb
XM_043253317.1 mRNA upstream 34974 9524286 ~ 9543828 (-) False nsfb
XM_043253316.1 mRNA upstream 34974 9524286 ~ 9543828 (-) True nsfb
XM_043253314.1 mRNA upstream 55955 9545267 ~ 9558906 (-) True arhgef15b
XM_043253315.1 mRNA upstream 55955 9545267 ~ 9557693 (-) False arhgef15b
TU128530 other downstream 606834 8875617 ~ 8878112 (-) True LOC122355288
unassigned_transcript_1920 other downstream 797376 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 797398 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 872501 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 965837 8518980 ~ 8519109 (-) True LOC122355887
TU129388 other upstream 1553576 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1832111 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2343567 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2459959 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 3160071 12649383 ~ 12675472 (-) False prr15lb

Expression Profile