RNA id: TU128658


Basic Information

Item Value
RNA id TU128658
length 4190
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G86959
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9596293 ~ 9600682 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tagaaacaatgacatttttattgatcTGGGTTTATTTTGTTGACTAAAAGATGTTCATtgaaatttgtacatttttacaaaggcatttacctttttttcaaTCATTAATGTGCTTTGAAAGATGTGCCATTTAATTTCACATGTATTTTATTGCTCATTATAACATAGCGATccattattaaattttttgaagttttgggtcaaatgcatgtttaaatagGCCTACCTATGACAGTTATAAGATGTGTGGAACATGAAGGAAATCTTAGAGTTTAGACTGCCAGGATGAATGCCTTGTATATCTATTAAGTGAGTTCATTTATTGCTTCTGTAGGACAGCTGTGAGATGaaactgctgtgtgtttgtataatgCCCGATCGAGATCAATGACCTGGCCTTGGACAAGGATTTTCTCCAGACACCCACGCAggtaatgtgtattttttgccTCCTCACTTTCACCTGAAAAAAAGGGTGAAGTAGGATTTGTTTAATACAAGAATTATTGTCTACTTGACAGATACGAGTGAAACGTTGAGAAGTTAACACAGAACGTTAGAGGATATTGGAGAATAGAGGAGTACTTGAGTGCGGAAATTCTTGCTTACTTCCACCTCGCAAATTTACCTGGCACTCCCCCAAAAGTCAGTAGCATCCCATTTTTCCACATGGAGAAAAAGTCCAGACTTTCCGTTTCAAGCTCTGGTTTGCTGTTTACCACAAGTGAATGTTTCAGTATGGTGAAAGTAAGTGTAGCAGGTTCATGGGGAGGGGCAACACTTTCCGATCCCTCTTTCAGGCCCAACTGCATCTCCTGTTACAGTGCAGAtaaatgggtaacactttacaacagAGTCCCATTAGTTAATTCTCTaactaaaatgtacttattttgaGCAAAGCATTTGTTACATTACATATTAAAGCATATATtaccaaaaaatttaaattatgtaatcGTTCagtcatgtcattccaaatgtATGTATTCTTATGTTGAACATGAAgagatttttaagaattttgaagaaccaatggtggtccccattgacttccatagtagggatgccaaacaaaaatgtgattGAAGTCAATAGGGACTTGTACACTCGTATACAGATTTGATGCAGATATACAACATGaggggtaagtaaatgatgataaaattgtaattttatcacCATTACACCTGTGTGCTTTTACACAAACAATATCTAGTTTTATCTAGTATTAGTGGGATCatcatttaaatgacaaaagcatttcattaacattttttttttaccttgacaTCTTTATTCCCTTCTAACTCTTTCAAAATATACTCAAATTCTGTGCTTTGGAGACTCAACGTTGTCCCAGTCCAGGATCCGAAGATCTCGACTGTGATACCGGCCTCTTCCGTCTTAAGTTCAGGAAGATCTGTCACAATATGTGCATCAGATGTATTAAACATAGCCACTCCAGTTCCTGGAAAATAGCTGCCTTTCTTGATCTCAGAGAAGCAGGGCTGGGATTCCCATGTTGAGTCTGTGTCCCAGGGGGTGCTGAGATTTAGCCAATGCCCTCCTCTTATACAAGCATCCATTTCTGGCTCaaATGGAAGAGCTTTTGTTTGTCCACCAGCATTCCACCAAGAGCAAGACGTATCTTTCCTGTTAGTTCGTGTTGTGTCAGTTTAGAATGAAGACCGACTACAAGCTCTAAATTGCTGTTTACCTCTAGCACCACAAATTTGCCCTCACTGCGCAACTCCAGCTGTCCGAAACAAACAAAGAATACTTAGAAGAATCAGTAAATTACAAATCACATTTCATCAACAAATCCTGTGGAAAAATTTATTATGGTTTTCACAATGATTAATTGCCtccaaaatcaaagtttttgtgaacataatatatgtttgtgtactgtatatgtttattatgcatatataaatacacacatatatatatatacacaaaataaattctatgaatataaatataacatgtaaatattttctaaatatatactgtatgtgtatgtctttatatatgcataataaatagcACTATGAACTatacaactgttttaaatacttataaagaaatgtttcttgaacgtcaaattagcatattagaatgatttgtgagGTTTCTTGTGCAGCATTGCTATTTCAGgaagaatttaattaaaaatatatttaattagaaaaaatatatatattttaataatatttcaccataTTACTGTCTCACTAATCACATAAATGTAGCCTCTGTGagcataatttatttctttcaaagacattaaataaatcttaaagaCCCCAGACATTTAAACtatatgtctgtatatatgGTATCATATACAAAGGGTTGTTGGTTTAAATTGCTTCAGAGAAAAAAGTAGagttttagaaaatattaacaGTATTTACCATGTGCCAGGCCCCATCATTGAGTTTTCTACCTCCTTTTACACTCACTAAGACGTCTGCTTTCCCAATCTGCATTTCAGGTATACCATCACGCAGTGAAAGCACAAACCAGTCCTGTCCTTCTTTGGTGTCTCCATAAAAGATGGCCCCCTCTGGGTCAAGGGTCCGAAACTCAAAGAAAGATCTGATGCTATAAGTGCAAGGTAAGACATCTCACAGTCAAAACCGCTACTATGATGACTACTGCAGTTGAGCGTCAAGAAACTACGGTTAACAAAGTGAAGCAGGTCAACTCACCTTGAGATGTCAGAGAGATTTGCACTCATCTGCATTAAAGGGGTCCATTTGGACTGTCTGTGCGCAAGATTGATGACTCCCTTGCTGGATATCTGTCTCAGTCATCCCAAAAATCAGAGAACGGCTTTGACATCATACAACAAACATCATACAGCAGCCAAGCATGCTCAGATTACATTGAGACATATCTCTCGCACTCTCGCTAAAGGCTAGGTAAACACAAGCATCTGCGATATCCCAGACAAGCCGCCAATGTAAATACTGCTGCCCCGGGCAAGTGTGGAACTAGGGTTCAGCGAATTCAGAGTCGAAAACTCTAACCGTGCAACGACTTTGTCAGCTACATTTGCTTCTAGGCCAGCCATTTAGCTCAAAATATACAGTGCGTGCTGTGGTCTGTCTTCTGTAATatgttttgaaattttgaattTGGGCATGTTCGCAGATGCATGCGCTGTATATCCAAAAATTCTTTCATTTAACATGGCAATACTGGTTAAAGAAATATAACTAAAGAAAGAGCTtagatgtttttcaaaaactgtATACATTCActatatgtgtgtctgtttgtgtaaacctattttctatttataaattggttaaaatgtaaaaacaaattacataagAAAAATCCATCAAGCTGAATTGTGTAATCCTTAAACTGTCATAAATATATGgcataaagaaaattaaaggaaaaattcaaactaaactacaaatttataaaaatgtaaatccacTTATTGGTTTGTgagcacaaacaaaaactgatcTGTGAAATTGGCttcaatatttttatctttaatatttcCATTACATAACACATCATTTACAAAGGCTTTTTTGTTACTGCAGTTTCACAAGATATTAGAGAGGGAGCAATactttcacaataaaataaacttttatttaaatggattGTCTTTggaattacataaattaatttcatatcaaagcttttttttttaaaaaatcagtttttttctattttctttttaatattaccaGAAGTCATTTTTGAGTGTAAATAGGTGAAGTGGATTGAGCAAGCATGTCTGTTGATTCAGTTGCATGGTACCGATTGCCTCTGCAGTATACGCAAGTTGTATTTAACATTGTAAAGAGCACTACTTCCTCAACTTTGCATagtatttacaaacaaaaagcttttttgaatataatatatcttTAATGTCCTCAGACCTATCTTTTAGAGATCTTATACTCACCTGTTCACTTGATACTCTCCTGCACAGCAGAATCAGGTACGGGCCTAAGAGTAGTATGAGCAGTTTCTTCAGATAGTTCATTCTCTTTTACCTCCAGAGGTTAGAACAGGAGTAGAAATAATGGAATCAGAATGTAAGATTTTGTTTAGCCAACTGCCATCAGACTccctctctctatttctctgaGAAGTGAGTTTAGCACACAGCTTCCCCAAAAGACCAGAGGCTGAGGATGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128623 lncRNA upstream 109114 9481585 ~ 9487179 (+) True G86943
TU128622 lncRNA upstream 111137 9481585 ~ 9485156 (+) False G86943
TU128592 lncRNA upstream 297444 9298270 ~ 9298849 (+) False pkd1b
TU128342 lncRNA upstream 720838 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 722748 8873327 ~ 8873545 (+) True G86756
XR_006252201.1 lncRNA downstream 9611 9610293 ~ 9616636 (+) True LOC122355291
TU128692 lncRNA downstream 19000 9619682 ~ 9622288 (+) True G86981
TU128691 lncRNA downstream 19077 9619759 ~ 9622288 (+) False G86981
TU128689 lncRNA downstream 19313 9619995 ~ 9622288 (+) False G86981
TU128693 lncRNA downstream 19313 9619995 ~ 9622352 (+) False G86981
XM_043253309.1 mRNA upstream 20573 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA upstream 20573 9560059 ~ 9575720 (+) True hdlbpb
XM_043253359.1 mRNA upstream 74631 9498576 ~ 9521662 (+) True wnt3
XM_043253287.1 mRNA upstream 289462 9285663 ~ 9306831 (+) True pkd1b
XM_043253389.1 mRNA upstream 313213 9281191 ~ 9283080 (+) True mrpl27
XM_043253295.1 mRNA downstream 22121 9622803 ~ 9635117 (+) True polr2a
XM_043253364.1 mRNA downstream 35791 9636473 ~ 9644761 (+) True capgb
XM_043253344.1 mRNA downstream 48069 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253393.1 mRNA downstream 55987 9656669 ~ 9662962 (+) True mfsd8
XM_043253345.1 mRNA downstream 64670 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XR_006252198.1 other upstream 743844 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 890962 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1752210 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2288064 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2291445 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 156591 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 270982 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 880933 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 886938 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 941547 10542229 ~ 10581755 (+) False svila

Expression Profile