RNA id: XM_043253393.1


Basic Information

Item Value
RNA id XM_043253393.1
length 2485
RNA type mRNA
GC content 0.43
exon number 12
gene id mfsd8
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9656669 ~ 9664139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGATATTTACTGTTTCTCACTGTTCACGTGTGACAACGTTCAGATGATTCGAAGTTTGCGCTGAATCAACAACACCAATGGACTTTAGACCGCGCGTGCGAATCACTCTTTAACACTACTGTGCCTATAACAGCTAAAATGGGAGTATTACACAAAGATCTAATTGCGTTTTCTACTTATCTGTTGTGCAAGTCTACGCAGCTTGCAGTCAAGTTAACTTGATTATAAAGAGCATGTCAATGTAAAGAGCTGACCTTCAATGAACCGAGTCTTGCCGTCGTTTTCGCTAGCTGCTTAATCACTAATAATGTCTCTTGTGGAGTCTGACGAAAACACTCCGCTTCTCAGAGGCGATATCACAAGtGGTGGGGATGCAGACAGAAGCCGCTGGAGGTCCATCAGGGTCATGTACTTCACTATGTTCCTTAGCAGCGTTGGTTTTACGATTGTAATCACTTCCATATGGCCCTATCTGAAAAAAGTTGATGAAAATGCAGATGCCAGTTTCTTGGGATGGGTGGTTGCTGCGTATAGTTTGGGTCAGATGGTGGCCTCACCACTCTTTGGACTGTGGTCCAATCACAGGCCTCGACGAGAGCCTCTAGTCTGCTCTATATTCATCAATGTCTCTGCTAACATTTACTACGCCTATGTCTACCTACCTCCTTCACACAAAGAAATTCACATGCTTTTGGCTCGTACGTTTGTGGGCATTGGAGCAGGTAATGTAGCTGTTGTGAGGTCCTATGTGGCTGGTGCCACTTCCCTGAAGGAGAGAACCAGTGCAATGGCTAACATGAGTGCCTGTCAGGCTCTCGGCTTCATTCTTGGCCCAGCCCTACAGGCTGTTTTGTCATTCATTGGAGAGTCTGGCTTCAGTGTGAAAGCCATCCAGCTTCAGGTTAATATGTACACCGCTCCAGCGCTGTTGGCAGCCTGCTTCGGGATCATTAACATTCTGCTGGTTATATTAGTCTTGAGggaGCACTGTGTGGATGACCATGGAAATCATATCCGTGCAATTAACTACACCTCAGAAGaGCAAGTAGATGTGGCTCCTGAGGTTGAAGGTGATATCGATCAGATCGCAGTGTTCACATCTAATGTCCTTTTCTTTGTCATTCTCttcatttttgctgtgtttgaaACTATATCTACTCCTTTATCAATGGACATGTTTGCATGGACGAGGAAAGAAGCTGTTTTGTACAATGGTATCATATTGGCGGCCATTGGTTTTGAGTCCATCCTCATCTTCCTGGTTGTAAAAGTAGTCTCAGCacgATCGCCACTGCTGCTCGGAGGCCTGATTCTCATATTTGCTGGTTTCTTTATCTTGTTGCCATGGGGAAATCAATATCCTAAAATACAGTGGGCAGCCATTGAGAATAACACCACACCAGAAATACGACTGGCACACACTCCACCCTCAAACGCTTCTCTGGAGCCCACTGGATGTCCGTCTGAACAGACCTGGTGCTTGTTTACCCCTGTAATTCATCTCGCACAGTACATTGCCTCTGACATCCTGATTGGAGTGGGTTACCCCACATGCAACGTAATGTCCTACACTTTATACTCAAAGATAATAGGCCCCAAACCACAGGGGGTTTACATGGGCTGGCTGACAGCATCAGGAAGTGGAGCGCGGACCCTCGGGCCTGTGTTTGTTTCTCACGTCTACACCATCCTGGGACCCCGATGGGCCTTCAGCGTCATATGTGGCATAGTATTAGCTGCAGTTGTTCTTCTGAGTGCCATGTACAAACGACTTATCGCCTTTTCCATACGCCACGGAAGGATAGAAGATGAAAGTCATGACTGACAGGTGCCTCCACCAACTACTAATGGACAGTTCGGAGAAGTGGGCTTGACTTAAATATggaaatcgtttttttttaaatagataacTGTATAAAGTGTGGAGCTTTTCAAGCATAATCATGGTTCTGAAGTAGTAAATATCTTGATATGTTGAAGtataattttcctttttagcTAAACTGTGAACCACTTGTAGCAGCATGACATGGACTGACACcatataaaatcaaacaatGGCACACTCTAAAAAGTCCCATGTGAACGGCAGTATTAATGATTTGGCAGCTCAGTGGGTTATGAAGCATCGCAGATGACTACTGTGCATAATGGATTatgattgttttggttttaataatctattttattaaCTTGAATTTCTGGCGTTGTAAAGTATTAACATGTGTTGGATGATTTACTCTCATTTGCATTGATAGGACAGGCTTGACACAGATGTTgaagtttcttttctttttaataacacTAAGCTTAAAAAGCACACAGGGTGCCGAGAATCACTTGAGTTTTTGGTGATTATAAGCTGCAAGACCACTGTATTTTAAATCCagcttttgttctgttttttgaGTTAAAGCACAACATTTCCTGAGAAATGGCAATAAATCgttcctttaatgtttttaaaaaaagtgaggCATGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12307 MSFD8, CLN7; MFS transporter, ceroid-lipofuscinosis neuronal protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128698 lncRNA upstream 1392 9654959 ~ 9655277 (+) True G86984
TU128693 lncRNA upstream 34317 9619995 ~ 9622352 (+) False G86981
TU128692 lncRNA upstream 34381 9619682 ~ 9622288 (+) True G86981
TU128691 lncRNA upstream 34381 9619759 ~ 9622288 (+) False G86981
TU128689 lncRNA upstream 34381 9619995 ~ 9622288 (+) False G86981
TU128727 lncRNA downstream 101170 9764132 ~ 9767228 (+) False LOC122355274
TU128830 lncRNA downstream 231788 9894750 ~ 9895975 (+) False LOC122355255
TU128848 lncRNA downstream 296776 9959738 ~ 9959969 (+) True G87094
TU128849 lncRNA downstream 297685 9960647 ~ 9960958 (+) True G87095
TU128850 lncRNA downstream 415506 10078468 ~ 10097980 (+) True LOC122355662
XM_043253344.1 mRNA upstream 3283 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253364.1 mRNA upstream 11908 9636473 ~ 9644761 (+) True capgb
XM_043253295.1 mRNA upstream 21552 9622803 ~ 9635117 (+) True polr2a
XM_043253309.1 mRNA upstream 80949 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA upstream 80949 9560059 ~ 9575720 (+) True hdlbpb
XM_043253345.1 mRNA downstream 2390 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XM_043253376.1 mRNA downstream 8559 9671521 ~ 9673314 (+) True LOC122355279
XM_043253377.1 mRNA downstream 8559 9671521 ~ 9673314 (+) False LOC122355279
XM_043253369.1 mRNA downstream 94285 9757247 ~ 9766664 (+) True LOC122355274
XM_043253381.1 mRNA downstream 111410 9774372 ~ 9780670 (+) True LOC122355282
XR_006252198.1 other upstream 804220 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 951338 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1812586 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2348440 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2351821 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 94311 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 208702 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 818653 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 824658 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 879267 10542229 ~ 10581755 (+) False svila

Expression Profile