RNA id: TU128691


Basic Information

Item Value
RNA id TU128691
length 2530
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G86981
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9619682 ~ 9622352 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGCTGCAGCTCGTTTTGAAATACATGGCGCTCACgtaaataagacaaaatattaagcaatatgTACTTGAAAAGGTAACATAATACATCCGTGTTATTTCAATGTTTGATTTAATACAgacacataaatataatttaaggaCACGGACCTTTTCAGGTAGGTagcctttttaaaaagtgaacccaaaaatttgaatgcaatgcaaataattttatttacacgCAAAATGCTTACATGAACGTCATACGAGATTTCAAACCATTCAGAGTACACAAGTTACAGTCTGTTGCTGAAAACCTCAATTTAAAACGCATTAAACATCGTTAAACACATTCAAGCCACTTGAAACAAATCTCACATTACAACGTCaaatttaaagggacagctcaccAATTTACTTACACGTGAtttcaaaaatttaattaaaaaaaaaaaaaagcgtgtgtgtaagagagagagatttagaATACAAAGAGATGTAAAGCATACTCGGTATTGTTTTGTCTCTTCATTTAGATCAATacctaacatttttaaatgtatacctGTTGTGCTCCATCACAGGTTTAAATTAGTGATAGTTTTGAGTAAACAATTAATACTGTAAGAGTCATTACGCTTAACTGAAAAATATCTGTTGCCCCCAAAGTAAACGACCATCAGCTCGCCTATTCGTTTTACGCGGGTTgcaaaaacttaaatatatatagttccCCCGTAAATCTGATAACTGCGTCACGGTGATTTCGTTTTCGTGGTTCACATACTGCTAATGTTAGCTAGCTCAGGCTCGTTTCACTTTAGTCTGGAGTTACGCAACTCCGCTTCCCTTCTGCCCTGTAAACCCGCCCAAGTACACAAGCACCAGACTCCATGTTTGTTCATCTCACCGCCACTGTACCCGCCATATACGACAAGATCCCTCGATCCACCTTCATTTGGGGTTATTTCCAAGCAATGATCCGATTTAATCGAGGAGACCGATTCAACGAcaacatatattcacataaaataaacaatgagtCGACGACTGTAACGTTACACGTATTGGGACCAAAACCAGTTTAAACCACTTTCCGAGTCAATAACACATTTATCCACAAAACTCAACTGTTAAGCCAATTTTCTGGATAAACGTGGTAAAAGATTTGGGTTTGACACGAGTAAATGTTACAACCAAGCTCTTGTTCCATTATCCGATTAGCTTTGTAGATACGACCACTACGAACTAACTCTTTTCGGCTATAAATCTTCTGTTTCAAGCAAGCTatgtttcttatatattttgtttattgtataGTCGGAACACGATTTAAACATTAGAGAAtcgcttatttttttaatgtaaatatatccGCTGCCATCCATGCTCAATGCTAACAGGCTAATATGAACGTGATACAACACATGATCGGTTAAAAAGCCACATCTACGTCTGAAACCATACAAAGACAAGACCGGGATCAAtacaaatagtttaaataaataaataaactgctaATCGTCATGAATGTTCctctaaatatatgtatatctagTTTCTTATACTACTGTATTAATATGTAACTAAGAGGACAAATCAAGCATGAAAAATGTCACTGAACCTATATGaacaatttcaaaaacattgtgttatatacatatacacgcacacacaggtTACATCGTAACCTATAATGTACTTTGTCCATAACTATGTAGCCGAATAATGCTGGTACTTCACCCTAATATGAACCCAAAtactcaataacacaaaaatacacattaaaagcTTTAAAGACGTAAACTAACAGTTTAGACAAAACAACTTTAAACGGGTACCGTTTAATGTTCCCATTCCACAAAGAATGGCGGCTAACAAACTAGCAGAAGCTCACAACAGTCGCTAGGTAACATCAAGTTACATTACTACAAATTCTTGATCACACTCAACAATTACGAGAGCAACAAACTGTATTAGATTAACcttattaaatgatataatttaatttataatactaTGGATTTGCGattatttacaagaaaatagGTAACGAGAAAATGTAAGCTAGCGCCTTTTTGTAAAACAACATGGCCTagatgtaaaaattattattattttttaagagtgGGCTACAATAGCGTTCTAATGATcaaaatagctttaaaaaaacattgaatgtGTAAAACAACAACGTTTCTCGaatgttttaattgaaaatgcaCTGTCTGGAACCCCAGGCTTTCAGCGGAGTTTCCAGCGGATCATACCGAAAAAAGCGCGTGCCGTCCAGCCATTGTTTTTACTCGACCTCGTGGATTCTTGCATTTTCCcgtagaaataaaaaaattaaggaaaATCGTATTAAATATTTCGAGAAATATGAATAAGcgtacaaaataaaagtaaattcataatttaaatggcgcaaaaaacatatttaaaacaaaaataatggcGTTAATCCTCGACGGTAGGTGTAGGCCTCTCACACGAGCTTCTTTTCTAGCACTGTTAGCTGATCCAGAGCGAGACGGACGGAACagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252201.1 lncRNA upstream 3123 9610293 ~ 9616636 (+) True LOC122355291
TU128656 lncRNA upstream 19077 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA upstream 19077 9596293 ~ 9600682 (+) False G86959
TU128623 lncRNA upstream 132580 9481585 ~ 9487179 (+) True G86943
TU128622 lncRNA upstream 134603 9481585 ~ 9485156 (+) False G86943
TU128698 lncRNA downstream 32671 9654959 ~ 9655277 (+) True G86984
TU128675 lncRNA downstream 38939 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA downstream 38939 9661227 ~ 9664139 (+) False mfsd8
TU128727 lncRNA downstream 141844 9764132 ~ 9767228 (+) False LOC122355274
TU128830 lncRNA downstream 272462 9894750 ~ 9895975 (+) False LOC122355255
XM_043253309.1 mRNA upstream 44039 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA upstream 44039 9560059 ~ 9575720 (+) True hdlbpb
XM_043253359.1 mRNA upstream 98097 9498576 ~ 9521662 (+) True wnt3
XM_043253287.1 mRNA upstream 312928 9285663 ~ 9306831 (+) True pkd1b
XM_043253389.1 mRNA upstream 336679 9281191 ~ 9283080 (+) True mrpl27
XM_043253295.1 mRNA downstream 515 9622803 ~ 9635117 (+) True polr2a
XM_043253364.1 mRNA downstream 14185 9636473 ~ 9644761 (+) True capgb
XM_043253344.1 mRNA downstream 26463 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253393.1 mRNA downstream 34381 9656669 ~ 9662962 (+) True mfsd8
XM_043253345.1 mRNA downstream 43064 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XR_006252198.1 other upstream 767310 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 914428 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1775676 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2311530 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2314911 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 134985 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 249376 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 859327 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 865332 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 919941 10542229 ~ 10581755 (+) False svila

Expression Profile