RNA id: TU128727


Basic Information

Item Value
RNA id TU128727
length 3097
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC122355274
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9757247 ~ 9767228 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcttaattttgtcAAAGTAAAATGctgtgcttaatatttttatgtggcaatacaaagaacaaaatgtttttgaaatagaaatagaaattttgTCTATACTTTGAAATAACTGTCTTTagtatggaagcccgtttccggcactgaacaaaaaaatgaaaaagctgcGACTTTCTCTCACAaatctgtctttcttttaatttggGAGATAAACTAGTATTTGTGGGTtatgaagtcagaattgtgaaatataaacacgCATTTCTGAGAAATAAACTTGCAAGATATAACGTCAGAAATGTGTGATATAAAATTTGCAGTTCGAATTGTGTGATaaaaattctgagaaaaattgtgagataaaacctttttttttattcagtggcggaaacagTCTTACTTTTCTgccattattaataaaaataaaataatactaactCCAAACTTATCTTTACAACCCACTTACATTAAACATGAAGATTTGGATGAAATATACCATATGAGATCATCGCACTAAGAAAAACTCACCCTCTGGCGTCAtagttattttttcttatttaattgcCTCCATGAAAATTCTCAAAGGTACAGAATTGTTAAAGCTGATAAGTCCCAATTCTGCAGATCAATACTTCTCTCTCGGTCCCCAAACACATCTCTAAGGTCACAGAATTGGATTTCCACCCGACATAGAGAAGTGGAGCGTCTAATAAAGGCCTCTACCAGAATATCCTCCCACCAAAACCCTTTGAGATCCCGATGGCGCTAACTCCATGCGTGCAGTCGCGAGCCGATAGATATTTGAACTCTGTCCGGGGGCACTCGTTACAAAACCACGATTCATCTTGATTATGGCTCTTGAGGACGTGCACAGTTGAGCGCTGTAATTGATTCACTCGTCTGTTGTGATGATCCGTGTATCTGATATAGCGAGCGGCGCGACAGTGGAAAAATGTCCACTGTGCATGACGTCTTCGTCTTCTCCCACAGGAGCGGATGAGCgataaataagatttattatCACACTGAAGACCAAACTCGTTTTAAGCGTGAAAAGTTTATCTTCAAGGTCGTCAAAGCAGCCGACCATCAAAAGCAGACTGAGGAAGTCACACTAGGACGCCTGGTACTCTAAGAGTAATGATTCCTTTACAAACATGAATCACCTGGTAAAAAGACGAATCTCCCAAAGCGAAGTGACAAGCCAAACTGACCACAGATTGAAAACCTTAACTGCTTagttatttctgaaggaaaggTGGGTCCCTGACCTTACTATTGCGCTACGTACCAGCTGTTCTTATTGTGAACAGTTCAgccatgcatatttttattgttattttttaaatttaaattcacatttagtcatttagcagatgcttttatccaaagtgacttactaatgaggacaatagaagcaataAAACTACCATGAGAGCAACAATGTGGAAGTGCTGTGACTAATGCAGTACATATAccatgtttaaaagaaaaataaataaataaataaaaagaaaccaaGAGAGAATAGAAAAGGAATACTAGTGCTGatcaatgttttatataataaagtataaagaAGAATAGAGAATGCTAGTGTTCCCTgtatagtgaaaaataaatatacctaaatgtatttatttcatgctaagtatacagtactacaaatgcatttacatatgtatgtacttaaaggaatagtacgtgtatatgactttcttctttcagacgaacacagcctgagtttttaaaaaatgtaacctgGCTCTTCTGAGCTTGGTaatggatagcggccattatatTGAAGCTCAGTAAATCAGGTatatatccgcaagtactgcATCATAAAATTTACCTTTATGTCTTCAGGGGGTTTTAACATATCCTCCCTTGATAAAGGGAGTGAGGTGCCAAACGTTACCTTGACAACGCTGCTCTCCAAcagttgcaaataaatattacttctcattattattattttatttaaatattttctcactGTGTCTTAGTAACTATTAATCTTTTTCAAATTAACATTGCTTGCACTAAGATCTTAAATCATATTTCTatcaatgataaaaatattttgtattacattaaaataaaaaccaatttAATCAACATATTCTACTTATGTTTGTATGTGAAGTTGAAATTAATCCCAACCCTCACATGTTCCTTTTGCTAACGGACTTCTGGAAGGGATTCAGTTCCTCACTTTCATTTGGAGCGTCCCTACAAATCCCCTTCCTGAAATGCCCTTTAAGGGAGCAAAAAAAGTCGTTTGGAATTCTCCATTGGCTGACCTCTGAATTCAGCCAAGACGCTCTGACAAGCTGGATGCGAGTTGTTTagattatcattttaaaactagaaatattattgttacaaaaacccatcgatctgcttcagaggacatgagATAACCCTTCCAAAgccgtataggttagttttacgatGCAGTGCTTGTGGATATATCAGATTTACTGAGCTTTAAATTCATGGTCGCTGTCCGCCAGCATTACCAAGTTTGGAAGAGCAAGGATAAATGTTTCCGACTGTGTTCGTTCAGagagaagaaagtcatatacacctaggatggcttgggggtgaataaaaaaatgccataattttcatttttgggtgaactacttctGTAATGAAAATACCCTGTACTTTTAGTCTGCTAGATTGGAACAGctaattttgtgcttaatgcactttaattgagCAGAAGTAGTGCTAAATTCCATCTAAATATCTGAAGTATAACTGATGGCGCTAAAGTGGAACTATGGCAAGTATACTtcatatatactttaaatatcttgcatttaaagaccaATATTACTCCAAGATCATATAATCCTGATTaatagtgacattaaaacacactttatGCTCAATGTTATAAACACAAGTAAGCCTATGGGTCAGGCTTCTGGTTCTTTACATGCTATTGGTAAATAACAATAGAAAGGTGAAACAATGGAAAAAtagatcttttaaaaacaatataacttATGCACGGATATATGTTTTAAGTTCATAATTTGTCATTAAcctatatttcattaaaacaggCAACCTACTATATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128675 lncRNA upstream 99993 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA upstream 99993 9661227 ~ 9664139 (+) False mfsd8
TU128698 lncRNA upstream 108855 9654959 ~ 9655277 (+) True G86984
TU128693 lncRNA upstream 141780 9619995 ~ 9622352 (+) False G86981
TU128691 lncRNA upstream 141844 9619759 ~ 9622288 (+) False G86981
TU128830 lncRNA downstream 127522 9894750 ~ 9895975 (+) False LOC122355255
TU128848 lncRNA downstream 192510 9959738 ~ 9959969 (+) True G87094
TU128849 lncRNA downstream 193419 9960647 ~ 9960958 (+) True G87095
TU128850 lncRNA downstream 311240 10078468 ~ 10097980 (+) True LOC122355662
XR_006252232.1 lncRNA downstream 311430 10078658 ~ 10098941 (+) False LOC122355662
XM_043253376.1 mRNA upstream 90818 9671521 ~ 9673314 (+) True LOC122355279
XM_043253377.1 mRNA upstream 90818 9671521 ~ 9673314 (+) False LOC122355279
XM_043253345.1 mRNA upstream 95030 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XM_043253393.1 mRNA upstream 101170 9656669 ~ 9662962 (+) True mfsd8
XM_043253344.1 mRNA upstream 110746 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253381.1 mRNA downstream 7144 9774372 ~ 9780670 (+) True LOC122355282
XM_043253329.1 mRNA downstream 97586 9864814 ~ 9874515 (+) True LOC122355252
XM_043253346.1 mRNA downstream 110388 9877616 ~ 9881012 (+) True LOC122355261
XM_043253347.1 mRNA downstream 110388 9877616 ~ 9881012 (+) False LOC122355261
XM_043253338.1 mRNA downstream 115805 9883033 ~ 9899001 (+) False LOC122355255
TU128728 other upstream 4671 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 911683 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 1058801 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1920049 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2455903 7307924 ~ 7308229 (+) True G86143
TU128819 other downstream 104436 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 714387 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 720392 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 775001 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other downstream 775001 10542229 ~ 10579996 (+) False svila

Expression Profile