RNA id: TU128795


Basic Information

Item Value
RNA id TU128795
length 4137
lncRNA type intronic
GC content 0.37
exon number 1
gene id G87055
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9763102 ~ 9767238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATTGTATAGAAATATAGTAGGTTGcctgttttaatgaaatataggTTAATGACAAATTATGAACTTAAAACATATATCCGTGCATaagttatattgtttttaaaagatctaTTTTTCCATTGTTTCACCTTTCTATTGTTATTTACCAATAGCATGTAAAGAACCAGAAGCCTGACCCATAGGCTTACTTGTGTTTATAACATTGAGCataaagtgtgttttaatgtcactattAATCAGGATTATATGATCTTGGAGTAATATtggtctttaaatgcaagatatttaaagtatatatgaAGTATACTTGCCATAGTTCCACTTTAGCGCCATCAGTTATACTTCAGATATTTAGATGGAATTTAGCACTACTTCTGctcaattaaagtgcattaagcacaaaattagCTGTTCCAATCTAGCAGACTAAAAGTACAGGGTATTTTCATTACagaagtagttcacccaaaaatgaaaattatggcatttttttattcacccccaagccatcctaggtgtatatgactttcttctctCTGAACGAACACAGTCGGAAACATTTATCCTTGCTCTTCCAAACTTGGTAATGCTGGCGGACAGCGACCATGAATTTAAAGCTCAGTAAATCTGATATATCCACAAGCACTGCatcgtaaaactaacctatacggcTTTGGAAGGGTTATctcatgtcctctgaagcagatcgatgggtttttgtaacaataatatttctagttttaaaatgataatctAAACAACTCGCATCCAGCTTGTCAGAGCGTCTTGGCTGAATTCAGAGGTCAGCCAATGGAGAATTCCAAACGACTTTTTTTGCTCCCTTAAAGGGCATTTCAGGAAGGGGATTTGTAGGGACGCTCCAAATGAAAGTGAGGAACTGAATCCCTTCCAGAAGTCCGTTAGCAAAAGGAACATGTGAGGGTTGGGATTAATTTCAACTTCACATACAAACATAAGTAGAATATGTTGATTaaattggtttttattttaatgtaatacaaaatatttttatcattgatAGAAATATGATTTAAGATCTTAGTGCAAGCAATGTTAATTTGAAAAAGATTAATAGTTACTAAGACACagtgagaaaatatttaaataaaataataataatgagaagtaatatttatttgcaactgTTGGAGAGCAGCGTTGTCAAGGTAACGTTTGGCACCTCACTCCCTTTATCAAGGGAGGATATGTTAAAACCCCCTGAAGACATAAAGGTAAATTTTATGATgcagtacttgcggatatatACCTGATTTACTGAGCTTCAatataatggccgctatccattACCAAGCTCAGAAGAGCcaggttacattttttaaaaactcaggctgtgttcgtctgaaagaagaaagtcatatacacgtactattcctttaagtacatacatatgtaaatgcatttgtagtactgtatacttagcatgaaataaatacatttaggtatatttatttttcactatacAGGGAACACTAGCATTCTCTATTCTtctttatactttattatataaaacattgatCAGCACTAGTATTCCTTTTCTATTCTCTCttggtttctttttatttatttatttatttttcttttaaacatggTATATGTACTGCATTAGTCACAGCACTTCCACATTGTTGCTCTCATGGTAGTTTtattgcttctattgtcctcattagtaagtcactttggataaaagcatctgctaaatgactaaatgtgaatttaaatttaaaaaataacaataaaaatatgcatggcTGAACTGTTCACAATAAGAACAGCTGGTACGTAGCGCAATAGTAAGGTCAGGGACCCAcctttccttcagaaataactAAGCAGTTAAGGTTTTCAATCTGTGGTCAGTTTGGCTTGTCACTTCGCTTTGGGAGATTCGTCTTTTTACCAGGTGATTCATGTTTGTAAAGGAATCATTACTCTTAGAGTACCAGGCGTCCTAGTGTGACTTCCTCAGTCTGCTTTTGATGGTCGGCTGCTTTGACGACCTTGAAGATAAACTTTTCACGCTTAAAACGAGTTTGGTCTTCAGTGTGataataaatcttatttatcGCTCATCCGCTCCTGTGGGAGAAGACGAAGACGTCATGCACAGTGGACATTTTTCCACTGTCGCGCCGCTCGCTATATCAGATACACGGATCATCACAACAGACGAGTGAATCAATTACAGCGCTCAACTGTGCACGTCCTCAAGAGCCATAATCAAGATGAATCGTGGTTTTGTAACGAGTGCCCCCGGACAGAGTTCAAATATCTATCGGCTCGCGACTGCACGCATGGAGTTAGCGCCATCGGGATCTCAAAGGGTTTTGGTGGGAGGATATTCTGGTAGAGGCCTTTATTAGACGCTCCACTTCTCTATGTCGGGTGGAAATCCAATTCTGTGACCTTAGAGATGTGTTTGGGGACCGAGAGAGAAGTATTGATCTGCAGAATTGGGACTTATCAGCTTTAACAATTCTGTACCTTTGAGAATTTTCATGGAGgcaattaaataagaaaaaataactaTGACGCCAGAGGGTGAGTTTTTCTTAGTGCGATGATCTCATATGGTATATTTCATCCAAATCTTCATGTTTAATGTAAGTGGGTTGTAAAGATAAGTTTGGagttagtattattttatttttattaataatggcAGAAAAGTAAGActgtttccgccactgaataaaaaaaaaggttttatctcacaatttttctcagaatttttATCACACAATTCGAACTGCAAATTTTATATCACACATTTCTGACGTTATATCTTGCAAGTTTATTTCTCAGAAATGcgtgtttatatttcacaattctgacttcataACCCACAAATACTAGTTTATCTCccaaattaaaagaaagacagattTGTGAGAGAAAGTCgcagctttttcatttttttgttcagtgccggaaacgggcttccatactAAAGACAGTTATTTCAAAGTATAGAcaaaatttctatttctatttcaaaaacattttgttctttgtattgccacataaaaatattaagcacagCATTTTACTTTgacaaaattaagaaatgtttcttgaacaccaGTCATAATATAGAAtgagttaaaaaatatatatttttgagactGTAGATAAAtggagttatctgtttttgcaaataaacacatatatatgcatacgtTCAGTTTTGCTgagaagatattttttaaagctcTCAACCGCATGCAGGTCAACTGTTTTGAAGTACGGTGACTCCTCTTCAGTGCAAATCTAGTGATAAAACAGCTCTCGATGCCTCTCATTCTGggatttattaatcatttgtaaaatattctgCTGTAAATGCTATGTTCAATAAGAGGAATAATTCATGAGTTTTGCACAGGAAAGATCCACACGAGACATGCTAAAAATGATCCTTTTGAGCATACATCCTTACCCACAGCCTTCAGTGAGGCATATTTGTTGAGCTCTTTAGCTGATTGCTGTTGCTCATAGACATGGGACAGCTGGCTGAGGGCTGGATACGGGTGCGTTTGCATCATGTTGTTTATCTGGCCGCCTtctgcaaacaaaacaaaatattgttcAAGGGTTGCATCattattttgtcttaatttaCAGCATTTTCTTAGTCATCCCTAATAATATGTCTTGCTTGCTGCTGACTAACGTCACTTGGGATTCGCTCGCCACTGAtaacaaaagagaaacagacaCCTAAAGGCTGGAAAACTTTCTGTACGTACAGTAGGTCGCAGgcagatgaaaaaaagaatcagACTGAACGGATTCGATAACGAGATGTTTGACGCGTGCGTGCGGCTAGTGTCACAACCCGGTCCAATCTACCTCCTGTGATGTGACAGTCGAAGAATAAGTGACGGTATGTATATACAACCGGTCCCATTGATTTGATTTCCTCCCTTGACTTCCTCTGGTTCATAGAGATGAATTGTCAGTGGTGAATGACGATCAAAGATGTGTAACCTGCGTGGCAGAGCTGTCAGCGCAGAGCTCCTGTTGTGACTAATTAATCACTTAGCCCTGCAGCAGGGTTGCTGACACACGTCTGTACTGAGCGCGTGCAGTGAGT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128768 lncRNA downstream 127985 9632044 ~ 9635117 (-) True G87034
TU128749 lncRNA downstream 188577 9573634 ~ 9574525 (-) True G87019
TU128629 lncRNA downstream 273812 9481630 ~ 9489290 (-) True ormdl3
TU128616 lncRNA downstream 449404 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA downstream 449574 9311701 ~ 9313528 (-) False thrab
TU128838 lncRNA upstream 152949 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 593639 10360877 ~ 10361414 (-) True G87104
TU128879 lncRNA upstream 642101 10409339 ~ 10444778 (-) False LOC122355705
XR_006252238.1 lncRNA upstream 645093 10412331 ~ 10444775 (-) True LOC122355705
TU128925 lncRNA upstream 811516 10578754 ~ 10579770 (-) False G87125
XM_043253367.1 mRNA downstream 7055 9743392 ~ 9756047 (-) False LOC122355272
XM_043253366.1 mRNA downstream 7055 9743392 ~ 9756047 (-) True LOC122355272
XM_043253392.1 mRNA downstream 22574 9734537 ~ 9740528 (-) True LOC122355289
XM_043253312.1 mRNA downstream 28762 9713064 ~ 9734340 (-) True LOC122355243
XM_043253313.1 mRNA downstream 34705 9713064 ~ 9728397 (-) False LOC122355243
XM_043253390.1 mRNA upstream 20787 9788025 ~ 9805510 (-) True LOC122355287
XM_043254356.1 mRNA upstream 371200 10138438 ~ 10144729 (-) True LOC122355804
XM_043253136.1 mRNA upstream 843410 10610648 ~ 10613502 (-) True chac2
XM_043253419.1 mRNA upstream 1133015 10900253 ~ 10915884 (-) False foxn2b
XM_043253418.1 mRNA upstream 1133015 10900253 ~ 10915883 (-) True foxn2b
XR_006252200.1 other downstream 273790 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 273790 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 273812 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 273812 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 884990 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 1275650 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1554185 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2065641 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2182033 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 2882145 12649383 ~ 12675472 (-) False prr15lb

Expression Profile