RNA id: TCONS_00009740


Basic Information

Item Value
RNA id TCONS_00009740
length 2082
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_004978
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46740584 ~ 46766300 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGAGGCGAGATGTCTGGAATTCTCGTGTGGAGTTTGATTCTGGCTTTAACAGCTCTCACGGTGTGTAAAGCTCAGCGCAGACCCTTTCCCAGTGAATCCCATGATAAACCAGGTGTCTTGTGTCTGAATGGAGGATCGTCTCTATCTTCTCTGTCTGGTCGGCATCTTCTCTGTCTCTGTGCTGAAGGCTTCAGTGGCTCCAGATGTGAAACAGACACATCGGTCTCCTGCTTCGATGGGATTGGTCAGCTCTACGTGGGACCCGTGTCTAAATCAGCCAGTGGGAGGGAATGTCTGGAATGGGATTCAGAGAAAGCGCTTGAAATCGGAGTTTATCTCAAGAGTCTGATCGTGGGTggacacaaacactgcagAAACCCAGACTTCAGCCGAAGACCGTGGTGTTTCGTAAAGACGCCATCCGGGATCATGAAAGAGGACTGTGATATTCCACGCTGCTCTAAAGATCACGGATCTGATCAGGACAGTCTGGCAGTTTCACAGTCAGGCTGGAGGTGTGGTCAGGCAGAGGGGCGGAGCATGAAGGTAGTGGGCGGTGCTTTGAGCATGTTGGAGAGACACCCGTGGATGGCGGCGATTTACAGCAGAAAATCTCGTGGGAGATTTTTCACCTGCGGCGGGAGTCTGATCTCACCCTGCTGGATACTGACAGCAGCTCACTGCTTCCCTGATGGGGCTCAGACTCTTGTCCATAAACTCTCAGTGGTTCTGGGAAAGAAGGCCATAAACGAGACGGATGTTCAGAGCGAGCAGGAGTTCAGGGTCTCTGAGCTCTTCATCCATGAACACTTCGACAACACTGACGGAAACTTCAACAACGACATCGCTCTGTTGAAGATTCGTGGTCCTGATGGCCGCTGTGCTAAAGAGTCGAGTTCAGTGAAGACGGTCTGCATTCCTGGACCCAACGTGTCGCTCAGTGATGGGACGTCCTGTACGGTGACGGGATACGGCAGAGAACATGAAGGGTCGTGGTTTTACTCTCAGTATCTCAAAGAAGCACAGGTCAAGATTTTGTCTCAGGATTTGTGTTCGAGTAAAGAGTATTATGGCAACATGATCACCGAGAACATGCTGTGTGCCGGCAGCCCAGACTGGAGCTCAGATGCCTGTAAGGGTGACTCTGGCGGGCCGCTGGTCTGTCGTGTCCAGGACCGAGTGTTTCTCTTCGGTGTGGTCAGCTGGGGTGAAGGATGCTCCAGAGCGTTTCGGCCTGGTGTTTATGCCAAAGTCAGCAACTACTACCACTGGATCCTGGAGAAGAGCGGCCTGACCTCACTCTCATgatcacacccacacacacagttaacgtctgaattattagcccctctgtatgtttttacccaatttctgtttaacagagagaaggttttttcaacacatttctaaacataatagttctaacaactgatttatttcatctttgccatgatgacagcacataatagactagatattcttaaaagtactagtattcagctgaaagtgacatttaaaggcttcactaggttaattagggtaaagttagggtaattaggcaagtctttgtaaagcagtgatttgttctggagacaatccaaaactaatattgcttaagggggctaataatattgaccttaaaatgggtttaaaagaattaataactgcttttattctagccgaaataaataaaactttccagaagaaaaaatattataggaaatactgtgaaaaatttctgaatctgttcaacatcatttgagaaataatagaaaaaaggaggggcataattctgactttagctgtatatgCTCTGCCATCTCATTGTAGTTCATTTACTGTAGATCAGTTACCTATAATCTGCTAGTCAGTACTGTATTGCATGTGTTGAAAGCAGCAAATAGTTTTAGTAAGTATTATTTAGAAAGTGTTagtttccattgtttttaaactgtacagCGTAACTTTGTAGACGTTTCTCTTTTGtctattttaattttcttttgttgtgTAACTACATACAATGACACTGGCCAAGTCAGAAACAGgccaataaacatttttaaataccttTTCAATA

Function

GO:

id name namespace
GO:0031639 plasminogen activation biological_process
GO:0006508 proteolysis biological_process
GO:0016310 phosphorylation biological_process
GO:0033628 regulation of cell adhesion mediated by integrin biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016740 transferase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030619-15 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within plasminogen activation. Predicted to be active in extracellular space. Is expressed in several structures, including eye; gill; gonad; heart; and liver. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease (multiple); Quebec platelet disorder; end stage renal disease; lung disease (multiple); and mitral valve prolapse. Orthologous to human PLAU (plasminogen activator, urokinase).

Ensembl:

ensembl_id ENSDART00000057179

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009729 lncRNA upstream 51796 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00010774 lncRNA upstream 202050 46542671 ~ 46543189 (+) True XLOC_004970
TCONS_00011035 lncRNA upstream 513368 46188296 ~ 46231871 (+) True XLOC_004963
TCONS_00011034 lncRNA upstream 642819 46078647 ~ 46102420 (+) True XLOC_004962
TCONS_00010772 lncRNA upstream 691043 46046285 ~ 46054196 (+) True XLOC_004961
TCONS_00010775 lncRNA downstream 271897 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00011036 lncRNA downstream 816198 47580022 ~ 47580566 (+) True XLOC_004991
TCONS_00010776 lncRNA downstream 843047 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00010777 lncRNA downstream 844515 47608339 ~ 47610330 (+) True XLOC_004992
TCONS_00011038 lncRNA downstream 1565042 48328866 ~ 48330894 (+) False XLOC_005002
TCONS_00009736 mRNA upstream 6130 46696992 ~ 46739109 (+) False XLOC_004977
TCONS_00009735 mRNA upstream 6130 46696992 ~ 46739109 (+) False XLOC_004977
TCONS_00009734 mRNA upstream 6130 46696992 ~ 46739109 (+) False XLOC_004977
TCONS_00009731 mRNA upstream 6837 46696889 ~ 46738402 (+) False XLOC_004977
TCONS_00009741 mRNA downstream 28083 46791907 ~ 46835940 (+) True XLOC_004979
TCONS_00009742 mRNA downstream 78094 46841918 ~ 46868634 (+) False XLOC_004980
TCONS_00009743 mRNA downstream 91212 46855036 ~ 46868006 (+) True XLOC_004980
TCONS_00009744 mRNA downstream 105447 46869271 ~ 46881002 (+) True XLOC_004981
TCONS_00009745 mRNA downstream 119961 46883785 ~ 46937956 (+) False XLOC_004982
TCONS_00009724 other upstream 141684 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 2118232 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 5284605 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 6333557 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 7241561 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009746 other downstream 120020 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 151547 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 2052336 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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