RNA id: XM_043253340.1


Basic Information

Item Value
RNA id XM_043253340.1
length 2237
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122355255
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9883033 ~ 9899001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAAATATGAGCACTGCTTTTGACACCACATTTTGATAAccacattaaatttaaacagtTCATGTAGAATCTATTGCGATAAATAAATGGTTGAAAAATTAACGTGGGCCTGTCTCACAACgttgttgttttccttttaattgAACAAGTGGATTATTTTGAAAGGTAAAACATGACTTCAGCAAAGCAAGACTTCAGTCTTGTAGTACTGATCTTACTTCTACACGTTTCAGTGAGAAACAAAGTAAAAACTGGAGAAACGACAATGAACCTGAAGATTTGACTTTAGACTCAGACTACTCAGGACGAGTGAAACATGAGATCTTCAGCGGGTCTTCAACACTCACAATATCAgacctgagagagacagacgcTGGAGAATATCAGCTCATGTTTGTGGATGGTGGAGTTAAACATCTCAGCTCAGCAGCCGTCAGTCTAACAGTCACAGACCTGCAGGTGAGGAAGAATTCTACATCTATAGACGCCAGAGGTCGGAGATTCGAGATACTGACCTGTGATACTTCCTGTGATTTGACATCCAGACCTCAGAATTTCTACTGGAAAAGAAATGGACGATATTTACTAGATATTAATTCGAGGAGGATTGCAGTTTATCCTCAAAGTTCTGGCAGTTACTCCTGTTTTCTTACTGCAGACCTTCTGAATTCCTCGTCtcctgtgtGTGTTTTTCAGAGCAGCTGCTGGGATGTGACTTACACCTCTAGAAGAGTCTGTGCTGTGGTGGGATCAACTGTAGAGATTTCCAGCACATACTCACATCCCCCTGGTcatactgtaagaaaaaaattctgGCATTACGGTCCATCTGGTGATTTCAAGGATCTGCTTAAGGAGTCTCAATTTGCTGGTCGTGTGGAGTATGTGGAGAACAAACTGAGAATCAAAGATCTCAAGATCAGTGACTCTGGAGTATATAGATTCAGGATCATCACTAAATTAAATGGCCAATATTCAGGATCACCTGGAGTCATTCTTACGGTTACAGGCACACAGATGAAAAGAAGCCAAGTCTTTCTATCAGAGAGACAGGAAGGGATATTAAGCTGTTCAGCCAACTGCACTGTGAACAAAAACACCTCTTACATCTGGTACAAGAACAGACGACAGGTGACAGATGGGTTCACTAAAGACAACAAGctgtatctggactcagtcagCAGTGAAGAGCTTCAACAGTATTCCTGTGCTGTAGGAGACTCAGTGAGTTCAGGGTCCAGCACAGCTTTACTGAGCGCTGCAATCATACTGTCTGTGTTGCTGATTCTTCTGCTCATAGGAGTTCTGTGGTGCAGGAGGAGAAAGAATAATTCATCTCAAAAGCATGAAGACAGGATGGAGAGTGGGCAGCAGGATTCGGCTGTGCTTTACGAGAACGCTACAGGCTTGTCTACGGTCTGCACACAGCAAGATCACATGAAGGATCAGGATGTTCATTATTCAGCTATTCGTTTCAAAAAGCagtctaaaacaaaaaacacatcatCAGCTCCTACTGCTGTACAGTCAACCACAGACGATGTTCATTATGCTGCTGTGAAGTTCAGTCGAACCCCAGCTTAAAATACATCTATACTCACCAACTCAATATAACTGCCTGCTATATATTGTCCAAATGCTTATAAACTActtgtgtatttaaatttttttaaacaacgcttaaaattatgaaaaagaaaaatgcttcacctttgaagcatcctaggtgtatgtgacttttaGATGAATCCAATAAGAGTTATATAAAACCAACTGAATAACCAACTGCGTTATCAGTGGTTATCAGGCCACAGATTTGTTCCTGAAAGGACCTGTTACGCCTGCTGGTAGGCTGAGAAGGCTTATATTGTTGAAGCGCATGGTTACATTCGCTGCATGCATGTATAAAGCTGAAGGTACCACTGGAGTACCAGATTGTTTCACCATTGACAATAACTGCACACAGACCAAAAAGCAGCGAAATAACGCATTAAAAGATGTCTTCAAGACACATATACCTGTACAGTCCACAAAATACTCCATTATGTGTTTATGAATtgttcttcatttaaaatgtatgtgtggTGGGAAAGGCATCATGTAATAGAAGTCCAAACATTTACCATATTTTTACCACAGTGCCGCTCGACCATGTAATGTGTAATCAATGCACAGTAACCACATCGTAAGTTTACTGTGGTATTAGATAAAGCACAGCAtaccaaataattaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128727 lncRNA upstream 115805 9764132 ~ 9767228 (+) False LOC122355274
TU128675 lncRNA upstream 218894 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA upstream 218894 9661227 ~ 9664139 (+) False mfsd8
TU128698 lncRNA upstream 227756 9654959 ~ 9655277 (+) True G86984
TU128690 lncRNA upstream 260745 9620101 ~ 9622288 (+) False G86981
TU128848 lncRNA downstream 63205 9959738 ~ 9959969 (+) True G87094
TU128849 lncRNA downstream 64114 9960647 ~ 9960958 (+) True G87095
TU128850 lncRNA downstream 181935 10078468 ~ 10097980 (+) True LOC122355662
XR_006252232.1 lncRNA downstream 182125 10078658 ~ 10098941 (+) False LOC122355662
TU128887 lncRNA downstream 598942 10495475 ~ 10496277 (+) False LOC122355192
XM_043253346.1 mRNA upstream 2021 9877616 ~ 9881012 (+) True LOC122355261
XM_043253347.1 mRNA upstream 2021 9877616 ~ 9881012 (+) False LOC122355261
XM_043253329.1 mRNA upstream 8518 9864814 ~ 9874515 (+) True LOC122355252
XM_043253381.1 mRNA upstream 102363 9774372 ~ 9780670 (+) True LOC122355282
XM_043253369.1 mRNA upstream 116369 9757247 ~ 9766664 (+) True LOC122355274
XM_043253243.1 mRNA downstream 584959 10481492 ~ 10496255 (+) True LOC122355192
XM_043254143.1 mRNA downstream 600892 10497425 ~ 10498640 (+) True LOC122355633
XM_043254025.1 mRNA downstream 611310 10507843 ~ 10516992 (+) True jcada
XM_043253442.1 mRNA downstream 626610 10523143 ~ 10582545 (+) False svila
XM_043253427.1 mRNA downstream 637188 10533721 ~ 10582545 (+) False svila
TU128819 other upstream 9138 9871664 ~ 9873895 (+) False LOC122355252
TU128728 other upstream 123572 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 1030584 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 1177702 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 2038950 7815823 ~ 7844083 (+) False LOC122355675
TU128881 other downstream 585082 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 591087 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 645696 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other downstream 645696 10542229 ~ 10579996 (+) False svila
unassigned_transcript_1922 other downstream 1187744 11084277 ~ 11084370 (+) True trnai-uau_3

Expression Profile