RNA id: XM_043254143.1


Basic Information

Item Value
RNA id XM_043254143.1
length 697
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC122355633
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10497425 ~ 10499698 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAGTCAATCCGTGTTGGGCTCAAGAGTCAGAGGAGGTGATACCGGGGTTGGAAAGTAGGGAAAGTGGGACAGCGGTGAGGGCGTAGGGTGTTGAGCACGCGGCTTTTAGGTTGTCGTCTTGACGACGCAAAGTTTGTCGCTCGCTCCCGTCTCGTCAGAAGCGGCACGCGCTCGGCGTGTGCCAGTGTTGAGAGGGGAAAACCTCAGTCAGTGGCAAATTTGGGAAACGGGGTGGAGGAAATGgcatttcagctgtttttgctGCCCGAGCGcggcgctgctgctgctggtggaGGTGACGCCTGAAGGGAGCTTTACTAACGAGGGATATATCTCTGATAGCTGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCGTTTCCAGAGGAATATGTGCCCACTGTCTTTGATCATTATGCAGtgagtgTGACGGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCGGGTCAGGTAGGGTTAACTCATTCCTCTCTTATTGGCCTGAGGCCTTTTCATTAGCAATAGTAACTCGATCGATTCAGGCAAAGTACACGGTGGCCTGTTCAGATGCGTTCTGAGACTTTTTGC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128887 lncRNA upstream 1148 10495475 ~ 10496277 (+) False LOC122355192
XR_006252232.1 lncRNA upstream 398484 10078658 ~ 10098941 (+) False LOC122355662
TU128850 lncRNA upstream 399445 10078468 ~ 10097980 (+) True LOC122355662
TU128849 lncRNA upstream 536467 9960647 ~ 9960958 (+) True G87095
TU128848 lncRNA upstream 537456 9959738 ~ 9959969 (+) True G87094
TU129023 lncRNA downstream 390778 10889418 ~ 10889625 (+) True G87181
XR_006252208.1 lncRNA downstream 417546 10916186 ~ 10919109 (+) True LOC122355308
TU129005 lncRNA downstream 420139 10918779 ~ 10939829 (+) False LOC122355308
XR_006252189.1 lncRNA downstream 456018 10954658 ~ 10955795 (+) True LOC122355200
TU129060 lncRNA downstream 482638 10981278 ~ 10987710 (+) True G87207
XM_043253243.1 mRNA upstream 1170 10481492 ~ 10496255 (+) True LOC122355192
XM_043253338.1 mRNA upstream 598424 9883033 ~ 9899001 (+) False LOC122355255
XM_043253337.1 mRNA upstream 598424 9883033 ~ 9899001 (+) False LOC122355255
XM_043253333.1 mRNA upstream 600892 9883033 ~ 9896533 (+) False LOC122355255
XM_043253334.1 mRNA upstream 600892 9883033 ~ 9896533 (+) False LOC122355255
XM_043254025.1 mRNA downstream 9203 10507843 ~ 10516992 (+) True jcada
XM_043253442.1 mRNA downstream 24503 10523143 ~ 10582545 (+) False svila
XM_043253427.1 mRNA downstream 35081 10533721 ~ 10582545 (+) False svila
XM_043253443.1 mRNA downstream 37700 10536340 ~ 10582545 (+) False svila
XM_043253422.1 mRNA downstream 43588 10542228 ~ 10582545 (+) True svila
TU128882 other upstream 6253 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 10084 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 623530 9871664 ~ 9873895 (+) False LOC122355252
TU128728 other upstream 737964 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 1644976 8836448 ~ 8852449 (+) False arsg
XR_006252209.1 other downstream 43589 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other downstream 43589 10542229 ~ 10579996 (+) False svila
unassigned_transcript_1922 other downstream 585637 11084277 ~ 11084370 (+) True trnai-uau_3
TU129235 other downstream 1196204 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 1438202 11936842 ~ 11944855 (+) False nbr1a

Expression Profile