RNA id: TU129121


Basic Information

Item Value
RNA id TU129121
length 711
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G87238
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11224765 ~ 11227915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGACGTATAAGCAGAGAGAGGGCTTCTGAGGAAGCCTGGACATGACGCTTTTCGTGCCGTCTGACCTTTCCGCCGTGACACTCGAATGGCCAATTCAAATACCAGCAGCATTCGAAAATCGGCTACATCAAACCTTTTCGCGAAGGTTTATAAATCAGCAGCGGGGGTCTGTTTTTGGAGTCTGTCAGTTAAGGAGCTTTGCGGACACCTGTGATAGCAGGTTAGCTCACCtgagaggaggagaaaggagAGCGCTGTGAAAGGACCACACACCCCTGCGCAGCTGAATCCACGAGTGAGACCACCTTTCCCTCACAATGGTTGGAATTAACCAAATCAATACACCTTTGTGTTCCTGAAGCAGAGAGGAACTAATGCCAGCCGAGGTCTCGTACTTTATTTGAGAGCTTTAAAGAGCAAGATCTTGCACCTTTTAATAAGTCTGCGGCTGGAATTATAAGAACCCGTTTGCCAGTCAACTTTCAGAGCTAATGCTCCTAAACATGACCGGTGTAATGTAACTTGTCAGATCGAAATGTTAATCAAGCTTTCAAAGACAATAATTCCTTTTGATCAAACTAAttccttgtgttttcatttacaatCGGACACTCAATACTTTGGGACAAATTGATCCCACAGCAACACAGgataaaattagttttacttTTGCATGAATACGTAGGGAGTATATGTtacaaacccaaaac

Function

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252230.1 lncRNA upstream 93875 11122923 ~ 11130890 (+) True LOC122355611
XR_006252223.1 lncRNA upstream 135607 11083398 ~ 11089158 (+) True LOC122355479
TU129083 lncRNA upstream 135708 11082200 ~ 11089057 (+) True G87220
TU129085 lncRNA upstream 183859 11040668 ~ 11040906 (+) True G87222
TU129065 lncRNA upstream 227771 10996730 ~ 10996994 (+) True G87210
TU129123 lncRNA downstream 32191 11260106 ~ 11376584 (+) False G87240
TU129127 lncRNA downstream 32191 11260106 ~ 11331801 (+) True G87240
TU129128 lncRNA downstream 32191 11260106 ~ 11419212 (+) False G87240
TU129129 lncRNA downstream 149198 11377113 ~ 11392372 (+) True G87241
TU129130 lncRNA downstream 149198 11377113 ~ 11379318 (+) False G87241
XM_043253278.1 mRNA upstream 12000 11210251 ~ 11212765 (+) True six3b
XM_043253794.1 mRNA upstream 59723 11141633 ~ 11165042 (+) True ppm1bb
XM_043253791.1 mRNA upstream 62755 11141624 ~ 11162010 (+) False ppm1bb
XM_043253792.1 mRNA upstream 62755 11141803 ~ 11162010 (+) False ppm1bb
XM_043253793.1 mRNA upstream 62755 11142269 ~ 11162010 (+) False ppm1bb
XM_043254116.1 mRNA downstream 2272 11230187 ~ 11277491 (+) True prkcea
XM_043253528.1 mRNA downstream 50357 11278272 ~ 11298505 (+) False epas1a
XM_043253526.1 mRNA downstream 50361 11278276 ~ 11298505 (+) True epas1a
XM_043253527.1 mRNA downstream 50363 11278278 ~ 11298505 (+) False epas1a
XM_043253530.1 mRNA downstream 51241 11279156 ~ 11298505 (+) False epas1a
unassigned_transcript_1922 other upstream 140395 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 643010 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 644769 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 733593 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 737424 10481615 ~ 10487341 (+) False LOC122355192
TU129235 other downstream 466929 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 708927 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 1504849 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 1532459 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 2214028 13441943 ~ 13444915 (+) True G88016

Expression Profile