RNA id: TU129284


Basic Information

Item Value
RNA id TU129284
length 246
lncRNA type read_through
GC content 0.58
exon number 2
gene id hoxb6b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11882151 ~ 11884097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACACCCAACATCTACCGAACCGCGGACCGCTCGTGCGCTCTCGGAGGTCTGGAAGACTCGCTGGTCCTAACCCAAGACCAGTGCAAGACGGACTGCACCGAACAGGGAGCAGAGAGATATTTTAACAGCGAGGACAAACCGTGCACGCCGGTTTATCCGTGGATGCAGAGGATGAACTCGTGTAACGgaatGCCTGGCAGCACCGGCCGCAGGGGTCGTCAAACCTACACTCGGTTTCAGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129264 lncRNA upstream 59363 11822063 ~ 11823322 (+) True G87337
TU129272 lncRNA upstream 79058 11803287 ~ 11803627 (+) True G87343
TU129270 lncRNA upstream 82058 11800356 ~ 11800627 (+) True G87341
TU129252 lncRNA upstream 138280 11741981 ~ 11744405 (+) True G87331
TU129185 lncRNA upstream 341581 11473846 ~ 11541104 (+) False G87282
TU129657 lncRNA downstream 113873 11997290 ~ 11997512 (+) True G87617
TU129663 lncRNA downstream 183986 12067403 ~ 12067629 (+) True G87621
TU129688 lncRNA downstream 266006 12149423 ~ 12149637 (+) True G87644
XR_006252169.1 lncRNA downstream 267735 12151152 ~ 12156922 (+) True LOC122355133
XR_006252170.1 lncRNA downstream 267735 12151152 ~ 12156922 (+) False LOC122355133
XM_043253493.1 mRNA upstream 7006 11873649 ~ 11875679 (+) True hoxb8b
XM_043253489.1 mRNA upstream 10911 11863622 ~ 11871774 (+) True ttll6
XM_043253490.1 mRNA upstream 10911 11864731 ~ 11871774 (+) False ttll6
XM_043253482.1 mRNA upstream 21113 11835273 ~ 11861572 (+) True LOC122355327
XM_043253485.1 mRNA upstream 21113 11835273 ~ 11861572 (+) False LOC122355327
XM_043253075.1 mRNA downstream 1592 11885009 ~ 11887121 (+) True hoxb5b
XM_043254009.1 mRNA downstream 21665 11905082 ~ 11932134 (+) True skap1
XM_043254299.1 mRNA downstream 53424 11936841 ~ 11945635 (+) False nbr1a
XM_043254296.1 mRNA downstream 53425 11936842 ~ 11945635 (+) True nbr1a
XM_043254297.1 mRNA downstream 53425 11936842 ~ 11945635 (+) False nbr1a
TU129235 other upstream 181030 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 798315 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 1300930 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 1302689 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 1391513 10487620 ~ 10491172 (+) False LOC122355192
XR_006252241.1 other downstream 53425 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 849347 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 876957 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 1558526 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 1712377 13595794 ~ 13596348 (+) True G88082