RNA id: XM_043253076.1


Basic Information

Item Value
RNA id XM_043253076.1
length 1460
RNA type mRNA
GC content 0.45
exon number 2
gene id hoxb6b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11882151 ~ 11884097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttttatttgttattatttcggAAAACGGTGAAAAGCACTTGCGCCTGAGTGTTTTGATATGCCCTGGGGATTCCGTTCCGCGCAACAAGAGGGCCCCCACCTTACGCGTTCTCCTGTAGTCAGAAGTGCTCAGGATTGGTCAGGCACTGATCAGCTGGTTCGTTTCCCCGCGGTCTCAGATTGGCACCTCGCCACCCCCCTTCGGCTAAAACCAAATCTCAGATAAAGTAATGGCAAAAACCGCTTGGactataaaacacaacaaatcatAACACTCGGACAATAACACTGGCCACCCCATGAGTTCCTATTTCGTCAACTCAACTTTTCCCGTGTCTCTACCCGGAGGACAGGAGTCTTTCTTGGGTCAGATACCGCTATATTCCTCTGGATATACAGATCCTTTAAGACATTATCCAAGCGCTACGTTCGGAGCTACCAATGTCCAGGACAAGGTTTACACCTCCTCGTATTACCAGCAAGCTGGGGGCGTTTTTGGGAGAAGCGGATCCGCCAGTGCTTGTGACTACACGACACCCAACATCTACCGAACCGCGGACCGCTCGTGCGCTCTCGGAGGTCTGGAAGACTCGCTGGTCCTAACCCAAGACCAGTGCAAGACGGACTGCACCGAACAGGGAGCAGAGAGATATTTTAACAGCGAGGACAAACCGTGCACGCCGGTTTATCCGTGGATGCAGAGGATGAACTCGTGTAACGgaatGCCTGGCAGCACCGGCCGCAGGGGTCGTCAAACCTACACTCGGTTTCAGACTCTCGAACTGGAAAAGGAGTTCCACTTCAACAGATATTTGACCAGAAGACGAAGAATTGAAATATCGCACGCTCTGTGTTTGACGGAGCGCCAGATAAAGATATGGTTCCAGAACCGCAGGATGAAATGGAAAAAGGAGAACAAAGTGCTGAACTCCGCAAAGGTCAGCGAAGACGAGGACGGCGGAAAGGCGGGATAGATGTTTTAAAGGAGCTCGTGACGAAGCCCTAGAAACATTGTACATAACGTGTAGCctgtagttttaattaatgagtACTGGTCTGtccaacaagaaaaaaaactacctAATGAGTTTTATGTTGacgtttaaaaaacaaaaaaacaaaaaaaagcttcaaGAGAggactttctttttcattaaaatgaatcaccTCTGTAAAGACGGTAAAAGATAGAGGCTATGGGAGGTGCTTTTATCACTGTTATATATTTTGCGGTATTTGGCCTATTTAAACTAATAAGACACGTGTTTTTGAACATTCTAATGCCTatcatttgaaacaaaacataGGTTCAAAGTTTAAAACTTTGGGATTAAAAGTCTTACATTGAATATGTATTTCAGTCCGTtgtgtgcttaaaaaaaaaaagagaagaaaatggGACGTTTTGATGCTTAATTTATTGGGTCGTCacttttgtgtatgtgtatgtgaatgCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129264 lncRNA upstream 58829 11822063 ~ 11823322 (+) True G87337
TU129272 lncRNA upstream 78524 11803287 ~ 11803627 (+) True G87343
TU129270 lncRNA upstream 81524 11800356 ~ 11800627 (+) True G87341
TU129252 lncRNA upstream 137746 11741981 ~ 11744405 (+) True G87331
TU129189 lncRNA upstream 385159 11484193 ~ 11496992 (+) True G87285
TU129657 lncRNA downstream 113193 11997290 ~ 11997512 (+) True G87617
TU129663 lncRNA downstream 183306 12067403 ~ 12067629 (+) True G87621
TU129688 lncRNA downstream 265326 12149423 ~ 12149637 (+) True G87644
XR_006252169.1 lncRNA downstream 267055 12151152 ~ 12156922 (+) True LOC122355133
XR_006252170.1 lncRNA downstream 267055 12151152 ~ 12156922 (+) False LOC122355133
XM_043253493.1 mRNA upstream 6472 11873649 ~ 11875679 (+) True hoxb8b
XM_043253489.1 mRNA upstream 10377 11863622 ~ 11871774 (+) True ttll6
XM_043253490.1 mRNA upstream 10377 11864731 ~ 11871774 (+) False ttll6
XM_043253484.1 mRNA upstream 20579 11835273 ~ 11861572 (+) False LOC122355327
XM_043253075.1 mRNA downstream 912 11885009 ~ 11887121 (+) True hoxb5b
XM_043254009.1 mRNA downstream 20985 11905082 ~ 11932134 (+) True skap1
XM_043254299.1 mRNA downstream 52744 11936841 ~ 11945635 (+) False nbr1a
XM_043254296.1 mRNA downstream 52745 11936842 ~ 11945635 (+) True nbr1a
XM_043254297.1 mRNA downstream 52745 11936842 ~ 11945635 (+) False nbr1a
TU129235 other upstream 180496 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 797781 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 1300396 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 1302155 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 1390979 10487620 ~ 10491172 (+) False LOC122355192
XR_006252241.1 other downstream 52745 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 848667 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 876277 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 1557846 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 1711697 13595794 ~ 13596348 (+) True G88082

Expression Profile