RNA id: TU129332


Basic Information

Item Value
RNA id TU129332
length 6863
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G87388
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10793063 ~ 10804738 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGCTTCAGGCTTTTGCCTCTTCTGACGACACGAACTGTGTGCCATTCGTTGTCATTCAAGTTCTGGCCCGCAAATATGGTTTCTGGACCTTTACCTATAACATGTCCCACACAGCGGTTAACAcaaagagcagagagagagagagcgatagagagacagaggaagaaaGGGGTTGTGAAACGGGATAAACTAAAAAGGGGTGTAGAGAGGTGACTGATTTCCATgtagagaaaaagaagaaatagcGGAGGAAATGATACTGTCACACATCACATTCACACATTTAGATCTATCTACGTCCTCTGGTCCATTTTAGAATAATGATATTGTATTTGCAGTGAACGGAGCAATCCCGCTTCCGCCACTAGATGGAGCCATGTAACTGTTTTTCCAACAACCCTCCTTTAGGGAACTGTTCTGCATCTGTGATGTCAGTCGAGATGTTCGGCTGCATATGCGTCTCACGTTTTTTCCAATTCCTGAGTGGTTTAGGAAGCACATCCAAAAACCTACAGACTGTAAACTCTATTCGAGAAAGCAATTTCTCGCCTGTAGAGCCTCCCCTTATCCCGTGTGTGCGTATGGTGAGTCCGACTGGGCCCCTGGACCTCCAGGCTCCAATCGAGCTTCCACTAGATGATCAGAGCGCGCGAAGAGGAGCCTGCAGGCTTTGTGATTTCAGCCGCTCTGCCTCTCTTTGACACGTCGTTGTCTCTCCTAATCAGTCAAACTGCTGCTAAGAGGGCAGCGTGTCATTGTCAGGGGCCCCTGCAGCCCATCTCACTTGATAACAGGTAAAAAGAGTTGCCATTAAAGAACTGCCAGGCTCCCAATCGATTTTCTATCCCTCCCTGCTCTCAATTACTATGAATCCAGATCGGCCAGCCATGAGCCAGCTCTGAAGGAAAGAAAAGCAGCAGGTAAGGTTTCAGACTGCGCAACAGCACCCCCTAAAGGAATCTTTGCAGAtctaaggaaaagaaaaagccaCCACTGAGAGGTAACACTGAGGGGCCGTACCATTAAGCCTCGGGCGATATACAAGACATGACATGTGCTTTTTATAGGCCTCTGACCATCGTTCGAAAGGATGTATGTGAAAAGGTGACAGCGTGTGATTGGACAGCTGGAGAGACAGCTAAAGGTCCAGGGCTGCTATGCCTTTATTAGGAAGTCATGTTCAGACAAACTCACAAGCAGCAAAGACAAaaagcctctctctctgtctgggAGGGCAGCTCGTTGCCATGGAACTGGGGCAGATGGTTGTGTGTGTCCGGTCACTTTGATTCTCATCTCCCAGGGtggagagagagggcagagttAAATAAGACAGAGGCGGGCAGGGGCTGGCTACAGCGCTCTGACAGGACAGGGCTAGCAGGAGAACACAGACCAGACGCGcgcaaacagacacacacacacacgcgctcgtCTCGGCCAGGAGAGATGAGATATATTCATATCTAGCTCATCCAGCTGAGAACGATACCCATGTGAAACAAGTGCAGGCAGCCATTTTGAGGCAGGACGAGCTTCATATTGAGGACACAGTAATTCAGCTCTACTGGGACTGACTAATCAGCAATGCTAAAGGCATTTTACAAACTCTTTGATCGActggcatatttaaaaaatgaatgtgttacagctcaatttttctattttttactaTGTATTGCAATTAACCGGGGGATCAGAGAAAAAATCCTGCcaatcctgtgtgtgtgtgtgtgtgACATCAACAGATTTTACGATATACATCATTGACTGGGCAGTCTGCGTCCGGTTTCACATCCTTATTTGAGGATGAGCATGTCACACTAAGAGATTCAAAACTGCTGAATTCAGCCTAGGATGacagaaatagaaaagaaatattttacaatattcagAATTTGTCTCTGGCTGCAGAAACCTTATAACGTGCACCCTAATTTGTCACTGGCCTGTTTATAAGACTACTGTGTCTGGGAGTGTGTTGTGCTCCCATTATTCAGAGGGAGTAGACGAAAGATGTGGCAAAGCCCCTCGAGGAAGCTCAGGTGCTTTGTTATCTTTGGCAGTCAGGTTAACACAGATGACTGCCTTATTGTCAAATTAGCCAATATACTGAGCTCAGGGTCGCAACGAAATAGCAAAACAATAACACGCTTACAAAAGCCTGTAAAGACGCACAAGCAAATAGAAAGACCAAGGGACAAAGCATTTTATCAGATGATGTGATGAAAGGTAAAATCCTTGAAATGTCTGGATGCTCCTGATTGGACAGGAAACTCAGGCTTGCTTACTTCTGTGAATTAACAAATTTGCTTTTGTTACTATGCAACAGTACAACTGAAGGCCAAATTTGGATGCAGAATCATATTAGTTTGATGATGAGGGAGCTGATCATTACGTTCATTCTTTGAATGTGAATGAGCAATGGCAGTTTGGGGACAGAACACTCTATGATGAGTCACTCAAAGAGATACGTACCGGAaacaagcaaacacaaaaacaaacaaagactcCTTTGAAAGAGCCTTTAGAGACTGCCATTAATTACCCTGAGGCTTTTGGAGAATCAATGCCAGGGAAGGCTGGAtctctcaaattaaaaaaaagagaaaaaatagaTTGGCAAAGCCTGCAGAGATGGAGAACACCTATCTGTCTCATcatatctctttttttcttcctctagTACCTTCATAAGCATGAAGCAAGTCTATATGctattaaaaggatagttcaagAAAACAGCAGAAATCTGTCATAATTAACTCATTCTCACAATGATTCAAATCAGTGTGCAGCTATTTTAGTGGAAAACAATGTGAATGTTTAGAATATGCATGTCAATCAGAAATAAATTTATACAGTACACTATAAATAATGTTATGGCATAAACAGTATAATAAGACATAACGAAGACAAGCAATTACTTTGCTTGTAAACTATCACATCTGTTAAGCTCCAAAAAATATGACCAGATCAATTGGCTcttttaaagtagttttatgtgtttatCACATTTGATTCAATCATCCAGCCATAACTATTCTTAGATATAATATCGTATGCCTTCAGAAGAGCACATACCATATAGACTAGTTCcgtcatgatttatttatttattttattttttctggagAGTAACAGCTGTGCTCTATGTGTGCCACTGTTTGGAAAAGACCAAGTGAAGATTGTAATATCTAATTTTCTTGTTCCAAGGAAGAAATAACTCGTAtagatatgtaaataattacacaattgTCAAGAAATAGCCACATTTCCCACCGAAAACCAAACACTTCCCGATGGTCGCTCCTTCTGCAGTGACCAGGAAGCAATAAAAAGACGACGGAAGAAAAATAGGAGGCAGTCATTGGCTGTCAAGCTCAGGGGCTGAGGAGGGCTTTGAGGAGAGGCTCTCTGAGGAAATGATCTTTGCGAGGGTTATTGGAAACGGCGTGAGCTGGAGTGTGATCTGTGAGTGAGAAACTTAATCGCCTCTCCTCTCATTCCAGTCAGCTCCATTTCTCACATTCCTAGAAAATGGCTGCCAGGGAGCCCGAAGGCTCCTGCAGCCCACAGGCAAAAACTAGCCATACCTGACAGCTCGCTCGCACTTTGGAAACACCACTCAAAGCTCTGCTGGCCGCAAAACAGAGGCCTCGTAACCGCAATGTTTTACACTTCTGAAAGCATACACGCGcacgcacatacatacaaatgaaCAGTACACATACAGAGAAGGGCGCTTTGGTTCAGTATCATAGAGgcagagagaagaggaagagaggggATAAGTCACTTACTGGTAGTACAGTTTATCCTGATACAGTCTAGATGGGGGAGAACAGACAAGATGTAAATTCAGCCTTCAAGGTTATGACTGCAGACATCCATTACAACACATCGCCCACAAACTGGGGACAGACACGCAAACCAGGTGGAGCGGCGAGGCGCTGTTTCGCTGACCAGATATacgctctctttcttttctacCTCCTGCGTGCTGATAATGAACCCCAGGTGGAGTGGATACGGACTCGCTGTCTGCGCTAATGAATATTCATGCCTTCGCTGTGCcataatatatttagaattaggGAAATTTGGCATGTATTGAAATGTGATTATACCCAGTTCCATACTAGTCTCGGGACTACTGAATATTCAGAGGTAATTGATTAATTTGCTCTCTGGGTTAGCTCAGAAAGCGGCGCAGGaagcagaaaagagagagaatcttGCCAGAGAAACAGTCTGTCCTCGCCAATGGCGCTGCTGATGCTCtcatatgcacattttttacaaCCCTTTCCCGTTAATGAGCGAAAAACAGAAGAATTAACGAATCACTCGTATTTGACCAAACTGGAAAAGGAAAAGGGCCGCCAGATAAGAGGGAGAGGAAAAACTTGTGTTTATGGACATGTCGCAGCAGAGCACCAGAGCGTGTCCACGGTAAGCCTTAGCCTCCTGGGAGAAGAGCTGAATTCAGAATGCTCCTGTAGATAAAAACACTCCAAAAACTCACAGCCCTTGACTTGATGTTCACTTCTTCCCGCTCGCATGTGAGAAGAACCCCACGTGCATGAATAAACATAGAAGTAACATGTTTTTTAGCCGGCTCTCACAGCTTCAAGGAAAgccagtttgtgtgtgtgcgcatccaaaaaaaaaaaaaaaaaaagcacttatcGCTGTAATTTCCCTAAAGACAATACACTGACACAATCATTATTAATGCTACTAATACTGCTTtgaatttaaatgctaaatttaattggctagaaaaaaaaaacggtttcaATTGTTATATAGTTGTGCTAGCTGATTTTTGCTGTTTCAATGCTAGCCAGCTAGATATCATTATGTCGGTAAGAAATCTGCAGAACTTGTAACAGCAATGCTGACtacatcaaataaaactaaCCTGTTCGTTTTTCAAGGCATAAAAATCAGTGTACAAAAATAGGCATTTCAAATGACCTGAAACTCTCTCACACTTACTGTCCTTATTGTTGAGCCCAGATATCACTTAACATTCAAGATGTTAACTGCTTTTCCAAACCCCATGTTCCCATTGGAATTTGACTTAACACTAAAcctaaatcttaaaaaaagaaactcaagGTGAACTgtctttaaaacactaaaaagtaCAGTACCTCTGAGACTCCTTGCTGAACTGCACAATGCAACTGCTTTTGTTCTGTCTGgtactgtataatataaaacCTTGCTTGAATGCTGGGAGGAGGCCCCCCTTTCCCATTACTATCTTTTGCAAAGCGTACTTCTAGAATGGAGAATCGATATTTCTCGTGCACAGCCTGGGCTGTCCCATGCTTCAGTGTGTGCTATGATGGAGTGGAAGGCCGAAAGGAATTCGGAGCATTACACAAATCCAGCTCTATCGTTTTCCCATGAGGCTGCAGCCCGTCGCGTGTCGTCAACCACAGTGAAAATCGTGGCCGCTAACAGCCAGAGAGCAACGTGTGTCCACCCTAACAGGGAGTGCAGTACCCTCTGGGACAGAAGGAATGATTGGTGTTTGTGTGGGTGCATGTCTGTTTGTGTATGCCGAGGAGTGCAGGTTTGAGCCTGCTGGGACTACTGGAAGGTTTTAGACATGCTATATGCAAGCCGACGTGTTAAATGGCACAGTGTATGTCACGCTGCCAAATGGGAATGGCTGACATTCATTTTAGCGAGGGAATGTTTGGTTCTGCACATTTCAGCAGAGGAACTTTTTTAGCTCAGTTCTGCATGAGAAATACCTGCCATAATGTGGGAGGACAGTTAAACGACTGATGTTCAAATTTACCTGCTGTGAACTAGCTTGAACTCGTGAATAGCAGAGGTGCTGCTTTATGAGTGGAGCAAGACTGTATAATATTAAGCTGTGCCAACGAGGGAGGAAAGCCTAGTGGCTTGTGGGGAAATGTAAATGAAACGTACTGGGCGGAACAATGGCTTGTCAGTGCTCCTGACATGTGTAACGCTGTAGTGGGGAGTCTATAGTATGCAGGTGTAGGTCTATTGTGAGTCAAGGCAGGGACTGTGCACTCTCTGTTAGGGAAAGCCTACAGCGTGCTCATCTGGGAGTGAGCGCTTGGCCGCAGACTCTGGCCATTGAAGGTTCTACATCCTTCTCTTCAACAAggatttgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatacttAGCTATACTTTGGGGACAAATGTATCCCCAAAAATGAGCTATTTGGACAAAACCTTACTTCCCTTAATCTGACACACAGGAATGTTCTCATttgtaaaaacatataatataatataatataatataatataatataatataatatataatataatataccgttcaaaagtttgaggtttgAGAAATATTGAGTAATATTTGTTCTTGAAAGACATTTCTTAGGCTTtataaggctgcatttatttgatcaaaattcgataaaataataacataaaatattactatttaaaataactatgttAGAACTGATTATACTTGAAAAGTCCCTgttcttatgcatttatttgaaagtactattacaatttaaaacaacttttataattaaatgtacttCGAaatgcagaattttcagcagcagcttcactgtcacatgatccttcagaaatctatgctaatttggtgctcaaaaaacactttgtattattattatcagtattaaaAACAGacgtgctgcttaatgttttgaTGTAAATCATGATGCAATctattttcaggattttttgttAACTAGAAAGTtcgaaagaacagcatttattcagatttattagaatgtatttattacaaatagaAATAGTTTGACTTTACAATTTTtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128985 lncRNA downstream 187044 10605232 ~ 10606019 (-) True G87164
TU128933 lncRNA downstream 210527 10579205 ~ 10582536 (-) True G87125
TU128925 lncRNA downstream 213293 10578754 ~ 10579770 (-) False G87125
TU128879 lncRNA downstream 348285 10409339 ~ 10444778 (-) False LOC122355705
XR_006252238.1 lncRNA downstream 348288 10412331 ~ 10444775 (-) True LOC122355705
TU129314 lncRNA upstream 11823 10816561 ~ 10864596 (-) False G87376
TU129316 lncRNA upstream 13220 10817958 ~ 10864596 (-) True G87376
XR_006252171.1 lncRNA upstream 64110 10868848 ~ 10894717 (-) True LOC122355137
TU129351 lncRNA upstream 91103 10895841 ~ 10896147 (-) True G87406
TU129382 lncRNA upstream 200270 11005008 ~ 11006938 (-) False cript
XM_043253136.1 mRNA downstream 179561 10610648 ~ 10613502 (-) True chac2
XM_043254356.1 mRNA downstream 648334 10138438 ~ 10144729 (-) True LOC122355804
XM_043253390.1 mRNA downstream 987553 9788025 ~ 9805510 (-) True LOC122355287
XM_043253367.1 mRNA downstream 1037016 9743392 ~ 9756047 (-) False LOC122355272
XM_043253366.1 mRNA downstream 1037016 9743392 ~ 9756047 (-) True LOC122355272
XM_043253419.1 mRNA upstream 95515 10900253 ~ 10915884 (-) False foxn2b
XM_043253418.1 mRNA upstream 95515 10900253 ~ 10915883 (-) True foxn2b
XM_043253414.1 mRNA upstream 114041 10918779 ~ 10931157 (-) False fbxo11b
XM_043253416.1 mRNA upstream 114041 10918779 ~ 10931157 (-) False fbxo11b
XM_043253417.1 mRNA upstream 114041 10918779 ~ 10931157 (-) True fbxo11b
XR_006252200.1 other downstream 1303751 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1303751 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1303773 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1303773 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 1914951 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 238150 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 516685 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 1028141 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 1144533 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1844645 12649383 ~ 12675472 (-) False prr15lb

Expression Profile