RNA id: TU129359


Basic Information

Item Value
RNA id TU129359
length 1395
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id G87409
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11259017 ~ 11298534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGAATAAGATGAGAATGATTCGTAAATAGCACCATttacgttttaatttttttttttttgacataatgCAATCTTTCTTATCTTTTAATGCTACAAAGAAAGACTGGAATACAAATGCTAGTTACTTTAAGCCACTATCCTGAGAATAAACAATCATAGACACTCTCAAAGATATACGATAAAATTagcttaatatattttgttaagaaacacacagaaacccCAGAGTATCACGAGAAGGTCATACACATCACAAAACGTAATAcaaaatctataatatatattagatatgtACTGTAAAAGAGAAAGCTACAGATTCATCTCTGTCTACTGTACAAGTACCAAGGCACTTCTGAACaccaaatacaaacattttttacgTGTTACATAGATCTACAGAGACCTCATCTAATGTAGACGCAATAGATATGTTTgtatgagaaaataaaatgcaaatttagaaatcagtttttaaaagaaagcagaTGTTATTAAAAAGAACGGTTAGTGTTTTAGACATACCATCACACCGGGGCTTTTCATTTTGGTCTTCCATttgcatcttttaaaataaagtgctttaaagaTGACAGAAACTATACATTTAATACAGCATTTGTCACAATTGTGAAAGGGATAGAGGAAGTTCTAAATGGAAATACAGACATGTTTCTGAGCTAAACAGTATTATGCCACATTTGTCGATGGTACAATGTCAAAGTGAATATTTAAGGCAATAGATTAGCAAAGTCTTTGAATTATACAAACACAGTAGTTGTATTCCAAACTGAATGAATAACttacaaataaaactacattatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatttgtatatgtatgtatatatttattattgtatattgaATATATTCTAGTTAGTTGAGATATAACTTTATAACAGTGGTAAATCTGACCATAAATGTTAAGAACACAGCATCTGAAGGCACAGGACAATATTAGAGTTTGAAATAGCATAGAGCGTTACATCgcaacatattttaaacaagtAACAATCAGATTTgtcaaatacatattaaaatatcacacaGGAAAATGTACAAACACGTCCATATAAAGGCTGATTATACATGCGTAAAAGACAACAGCGTAATAGGCAAAGGATCACTGAAGAAGATCTGGGTCTATGTGGTCTGGTCCAAAGCTCTCAGAAGGTCACTGCCCTGAAGCAGATGCAGGTTTCCCTGTAGAGGCACGTTTACCTCACAGTCATATCGTGTCAGCTCTGGCAGACAGTAAGAGTCAAACGATGGGCCCAGCAGTTGACTTATCATGCctgtgtgtgtttgtgtgtgtgtgtgtctgt

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129411 lncRNA downstream 93978 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA downstream 132738 11124447 ~ 11126279 (-) True G87450
TU129386 lncRNA downstream 187252 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 252079 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 362870 10895841 ~ 10896147 (-) True G87406
TU129370 lncRNA upstream 13938 11312472 ~ 11315998 (-) True G87417
TU129367 lncRNA upstream 17849 11316383 ~ 11318921 (-) True G87414
TU129509 lncRNA upstream 280654 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 280687 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 454515 11753049 ~ 11790926 (-) True G87547
XM_043253246.1 mRNA downstream 39465 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 136179 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 174981 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 204211 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA downstream 204212 11049679 ~ 11054805 (-) False kcng3
XM_043254472.1 mRNA upstream 25867 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 25867 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 45925 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 45925 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 77261 11375795 ~ 11392390 (-) True ldb3b
TU129388 other downstream 213135 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1769705 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1769705 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1769727 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 22889 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 534345 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 650737 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1350849 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1372091 12670625 ~ 12675472 (-) False prr15lb

Expression Profile