RNA id: TU129367


Basic Information

Item Value
RNA id TU129367
length 2449
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G87414
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11316383 ~ 11318921 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaaataaaatgaaataaatggtaacactttacaataaggttcattagttcaCATGAACTTAGAACGAAcgatacttctacagcatttattaatcgattaaatgttaatttcagcatttactaatgaattgcatccaaaataaaagtttgtctttatgtttacagtgtgtatttattatgaatatataaatacacatacacacagtatattatatatatataaattacatttatttagaaaatgtatctttaaCGTATACCTGTACgtgtttgtatattatattgtatatgcaTGAGTATATCAAACAGccctaataaataaacacacacacacacacacacacacaaggcaaAGAAGGCAGAACATGATGGACACTTACAGCTACACGAGCCTGGAAATCAGCAGTGGGGACAATTGGGATTGGGCCACCCTGCTTTCCAAACTTCCTTTCAAGACTTTCTTGTACAGACACtggacaaaacaaaagaaaaaaggttgatcatttatttaaatccaagtttctatacattttccatttcaaacTTTTTCAGACTCACATTTCCAAACCTCTCAATAGATTTTcagattatatttaacattaatggGTGATACAGCATTACTTTCAGCTTTAAATTCTGTATTGCAGTAAAGTCATctgcaatttttcttttctcaatttttcttttctgattttCTCTGAGTGACAGCATTCAGAGTccctaaaatataataataataataataataaaaatgcaaacatatgaatacacacaataatttttttgtgcctTCGAGAAACTATTAACATGCATATGGgatattttttgccattttatttttaaataacctatTTCCTTAGTGTGTCTCAGCCAACTTACTATCAATACAAAAAGAGCATGGATGCACATAAATCAAGAGATTTAAAGAGTTCAAAATTTGTTAAAAGGGGGCCGCAAATAGGTACCATcataatataatgaaatcaGTCAACTTTTATTCTGTCACACCGACACATCTCTTCAAAAGCAGCTTCATGACCCTGGTATCCATCCCATCTAATTACAGAAAATGACATTAACGGATCATTTCTTGAAGGGCCAGCGGGCTTTGACACTTGGGTGGTAATTAAATTGGTTTACCCGATGAGACAAAGAGAATCTGTGCCATGTGATCAAGTATAGCATATAGCACACAAAAGTAGGGGTGGTTCAAACTCTGCTTTAGGAAACAGTGTCACGCCCTGCCGGTCACAGCTATGGACCAAGCCTGCCTGAGTGCTAAGAATAAGTGCTAAAAGGGAGGGAGCGATGAAAAGAAAGGGAAtcaagaaaaactaaaacaaataggGTGTTACAGAGAACATTCTGAAGAGATAAAAATGCCTGCGGGCAGACAATagctttgaaaaatgtaatgaagCACGTCCATTGAGTTCATGCTGCTACTCTTTGAGTGACTGAGGCTGAAAGACCGGTTGGAAGAAATTTAAACACGTACTCAGCAGGTGGTAGTTGGAGTCTCTCTCGTACTTGAAGGTCAGACGACCGTAGCTGACGTGGTTCAGGTTCTTCAGCCACTCAAAGTAAGAGACTGTGACACCTCCAGCGTTCAGGTACATGTCCTGCGCATCGAGATATGAATCATTATTCCCATTTCAACTTTCCTGAAGCACAACAGAGTTAGAGATTATTGTTTTCTTACTGGAATGACCATGATGTTCCTTTCTAAGAAGATCTTGTCGGCATCTGGTGTAGTCGGACCATTAGCGCCTTCAGCAATCTTGGCTTTGATATTGTGGGCATTCTTCCTGGTCAGCTGTTTCTCTCCAGCTGCAGGGATGAGGATGTCACACTGAGCTTCCAGAATGTTCCCCTCATATGGTTGAGAGTTAGGGAAGCCCACAATGGTGCCATGTTGCTAAAGAGTAAGCAGAAACATCttgaaaaaaaagcttaaataagAATAGAAGGGCAAAAAAGTGATCGTAAAGGGACTTAACGGACCAGTTTGTAGTCCTCCAGCTCTTTGGGGTCCATGCCGTTGGGGTTCCAGATGCTGCCATCGATTTCAGCAATTCCCACACACTTGGCACCATAACGGTGGAGGTAACGCATGGAATGCAGACCCACATTACCGAAACCCTGGAAGATAGGATAAGAAACTAAAATAAGCATTGGTAAAAACAGAAtccagttttgtttgtttttgtgccaCTGGCGCCCCCGTGTGGTTTAAATGAGCATACACAAGCTATCGACGGGCAAAAACAAGCATCTTTGTCATAATTGCAGCAGAAATACTGGAAATAGCTTATACTGGAAAGCCTATTCGTCTTATCAAATGTATTTCTGGCATTTCATGTGCGTGTCAAAAGGGGAAATGCATATGGCTGATCACATTACGGAAGGGCAAATGGGAAGCCGTCGTATAGACTCAGTTCAACAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129370 lncRNA downstream 385 11312472 ~ 11315998 (-) True G87417
TU129359 lncRNA downstream 17849 11259017 ~ 11298534 (-) True G87409
TU129457 lncRNA downstream 32797 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA downstream 32797 11278324 ~ 11283586 (-) False G87484
TU129455 lncRNA downstream 43081 11271741 ~ 11273302 (-) True G87482
TU129509 lncRNA upstream 260267 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 260300 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 434128 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 480084 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 480671 11799592 ~ 11800481 (-) True G87552
XM_043253246.1 mRNA downstream 96831 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 193545 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 232347 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 261577 11049679 ~ 11054806 (-) True kcng3
XM_043254472.1 mRNA upstream 5480 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 5480 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 25538 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 25538 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 56874 11375795 ~ 11392390 (-) True ldb3b
TU129388 other downstream 270501 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1827071 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1827071 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1827093 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 2502 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 513958 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 630350 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1330462 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1351704 12670625 ~ 12675472 (-) False prr15lb

Expression Profile