RNA id: XM_043253701.1


Basic Information

Item Value
RNA id XM_043253701.1
length 1390
RNA type mRNA
GC content 0.35
exon number 5
gene id cript
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11005006 ~ 11006954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgacaatgttACGTCACTAGACTAAGCAGTGTTTCTAGCTTCGTTTTTACAACAACTGAGAACTATCTAGACGTGTTAGCTAAGATTTTCGGACTAATTTGAAGATGGTTTGCGAGAAGTGCGAGAAGAAGCTGGGGCGAGTCATTACGCCTGACACCTGGAAAGATGGGGCTAGAAACACAACAGAAAGCGGTGGTCGAAAgctcaatgaaaataaaatgctcacGTCAAAAAAAGCCAGGTTTGATCCGTATGGGAAATCTGGCTTTGCCACATGCAGAATATGCAAAAGCTCTGTACATCAGTCTGGTTCGCATTACTGTCAGGGATGCGCTTACAAAAAAGgAATTTGTGCTATGTGTGGGAAGAAGGTTCTCGACACAAAGAACTACAAACAGACTTCGGTTTGATTCGTTATTGCTTGATGGAGATTCATCTTTAGCTAAGAAGGGGATGTTTGTGGATGTATGTGTTGACTCTTCCGAGTGTTGAGAATGATCACTTGAGTTCACAAAAGAGTTTTGATTGAAGCGTTTTGTGGTGCAAAAGGAGTGCACTAGTTCAtgactgtatttatataatatgtcgGTTGTATTTTTTCTCTCACTAAACAAACTTAGAGCAATATATTGGCTTGTACTGTTTGGACAATGTAGATGCCTTTGAGTACATTTGCTGGGGAACATTCTTTGAACATGTTCTTATTCATTTGTaaccttttcttttaaagcaaatGATTTATTCGTTTTAATGCTACCAAACAAGATGACAGTGATTATGCCATTTAGTTTAAACGACTTTTCTTAGTGATAATctattggctttttttttcttttctttttttgccgtTTGACCTTACCTAGACTTTGACTTTTTAATGTTATCTCTTCCCTCAATGACGGAAATATGAATACATCTATCTTGTTTAAAGCGATATATCCTCTACTGTTTTCACTATCCTGCAtctgtgtaaattaaataaaataaagtgtaaatatgaaacaaataGACAGTGACATACCAATATAGGACAGCTACGTTCAGTGTACAGTGATGTTTATGGTCTGTTCCCACTTTGTATTGTTCTCCCATTGGTTCTTTTTGTCAACACTGATCCAGATATTTGTTGTTTCCTTTTTAGTcataatttagaattaaatttcTTTTGGATCCACATAATTGTATGATATTAGGGTTTGTAGAAATTAACTGTTGTGGATGCTCttacgtatttttttttttgacaattcaCAGCATAGCAATACATAGATTCTGTATAACATAATTTCCCTAATATCAGTTAAATTAAGAATGATCTGGGACACCTATTACAACGTGAGACTGTTTTTacatctgtaaatatttattgacaaataaaattgtgacaaca

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K24826 CRIPT; cysteine-rich PDZ-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129351 lncRNA downstream 108859 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 110289 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 140410 10816561 ~ 10864596 (-) False G87376
TU129316 lncRNA downstream 140410 10817958 ~ 10864596 (-) True G87376
TU129332 lncRNA downstream 200268 10793063 ~ 10804738 (-) True G87388
TU129386 lncRNA upstream 64295 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 101942 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 117493 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 252063 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 264787 11271741 ~ 11273302 (-) True G87482
XM_043253850.1 mRNA downstream 8425 10985042 ~ 10996581 (-) False socs5a
XM_043253848.1 mRNA downstream 9099 10985042 ~ 10995907 (-) False socs5a
XM_043253847.1 mRNA downstream 9100 10985042 ~ 10995906 (-) True socs5a
XM_043254470.1 mRNA downstream 66993 10931862 ~ 10938013 (-) True msh2
XM_043253414.1 mRNA downstream 73849 10918779 ~ 10931157 (-) False fbxo11b
XM_043253699.1 mRNA upstream 5518 11012472 ~ 11027430 (-) True rhoq
XM_043254163.1 mRNA upstream 37322 11044276 ~ 11045889 (-) False LOC122355648
XM_043254162.1 mRNA upstream 42725 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA upstream 42725 11049679 ~ 11054805 (-) False kcng3
XM_043253869.1 mRNA upstream 75251 11082205 ~ 11084036 (-) True hcar1-4
XR_006252200.1 other downstream 1515694 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1515694 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1515716 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1515716 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 2126894 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 35934 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 314469 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 825925 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 942317 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1642429 12649383 ~ 12675472 (-) False prr15lb

Expression Profile