RNA id: XM_043254163.1


Basic Information

Item Value
RNA id XM_043254163.1
length 488
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122355648
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11042888 ~ 11045889 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAACTTCCTACACAAGGAAAAAAGCCGGTTGAGTTCCGTCTTCCCGGTCACTTTCACCTCGCCGGTGTCcgtttattaacaaaatgtattacaaatttagCGGATTTACCCAAAGACTGACGGGAGCTGTGTCATCCTCCGCATACAGTCCGCAGGGCTTGAGGTCAAATATACCATCTGAATCCCCTGCCATCATCTTTGCCACCCCAACTAAACTGGTGTCTCAGTCGAATGCTGCAGTGGAGTATATGGGTGCCAACAAGGTTCCAGATCTCCAGAGGATATTTCAgGTCTCTGACGAGATTCCTGTTCATCTGAAACGAGGTGTTTCAGACAGACTCTTGTACAGGACCACCATGGCATTGACAGTCGGGGGAGCTCTCTACTGTCTCGTAGCTCTTTACATAGCAGCGCAGcccaaaaacaaatgaactcTACCCAGCCTATTTTCATCGACtcagcattaaaataacatttgggGTGTGTA

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129382 lncRNA downstream 37338 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 148129 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 149559 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 179680 10816561 ~ 10864596 (-) False G87376
TU129386 lncRNA upstream 25360 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 63007 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 78558 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 213128 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 225852 11271741 ~ 11273302 (-) True G87482
XM_043253699.1 mRNA downstream 16846 11012472 ~ 11027430 (-) True rhoq
XM_043253701.1 mRNA downstream 37322 11005006 ~ 11006954 (-) True cript
XM_043253850.1 mRNA downstream 47695 10985042 ~ 10996581 (-) False socs5a
XM_043253848.1 mRNA downstream 48369 10985042 ~ 10995907 (-) False socs5a
XM_043253847.1 mRNA downstream 48370 10985042 ~ 10995906 (-) True socs5a
XM_043254162.1 mRNA upstream 3790 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA upstream 3790 11049679 ~ 11054805 (-) False kcng3
XM_043253869.1 mRNA upstream 36316 11082205 ~ 11084036 (-) True hcar1-4
XM_043254109.1 mRNA upstream 73529 11119418 ~ 11122838 (-) True zfp36l2
XM_043253246.1 mRNA upstream 171403 11217292 ~ 11219552 (-) True six2b
XR_006252200.1 other downstream 1554964 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1554964 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1554986 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1554986 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 2166164 8875617 ~ 8878112 (-) True LOC122355288
TU129464 other upstream 275534 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 786990 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 903382 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1603494 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1624736 12670625 ~ 12675472 (-) False prr15lb

Expression Profile