RNA id: TU129411


Basic Information

Item Value
RNA id TU129411
length 580
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G87449
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11108896 ~ 11165039 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATCAAACTTTAGCAATCCTTTATTGAGGAGAACAGATCATATTCACTGTTTGCTACTGAAACATCACAACATCATACTGGGGACGTTCATTACATGGGCTCGTCAGGTGGTTAGAGAGaatcagagagaaagaggaaggaCATGAGAGCAAGAGAATTCAATCACACTCTCCAAAAAACACACGGGACAGTAGTTTCCCCCTCCGGCGAAACCCTCTCTTCTTAAGCCAACACActtggaataaataaaatactttgtcTCAATTATTCTATGCATCAATAATTGTTGATATACACAACGCAAATGAATGTCCTTGAGCACTCACcgcacaaaatatatatctctTTACCATCTCGGCTGGAATCTGACTCAATCTATTAGTCCTAAAATGAAGCTTTCCAGCATATGGCTACAAATTATGTGTACCAGAAGAGGggaaaactgcaaaaatatatatacatacataaacaatcATCTcataaaattcaattaaacacTCATTTAAAGCTACACACCAGAGCAGGTGAAGTCGATGaataaacaaccaaaaaaaaaaaaaaaaaaGAGGAGGAAGAAAA

Function

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129386 lncRNA downstream 37131 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 101958 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 212749 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 214179 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 244300 10816561 ~ 10864596 (-) False G87376
TU129359 lncRNA upstream 93978 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 106702 11271741 ~ 11273302 (-) True G87482
TU129457 lncRNA upstream 113285 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA upstream 113285 11278324 ~ 11283586 (-) False G87484
TU129370 lncRNA upstream 147433 11312472 ~ 11315998 (-) True G87417
XM_043253869.1 mRNA downstream 24860 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 54090 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA downstream 54091 11049679 ~ 11054805 (-) False kcng3
XM_043254163.1 mRNA downstream 63007 11044276 ~ 11045889 (-) False LOC122355648
XM_043253699.1 mRNA downstream 81466 11012472 ~ 11027430 (-) True rhoq
XM_043253246.1 mRNA upstream 52253 11217292 ~ 11219552 (-) True six2b
XM_043254472.1 mRNA upstream 159362 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 159362 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 179420 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 179420 11344459 ~ 11374806 (-) True bmpr1ab
TU129388 other downstream 63014 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1619584 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1619584 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1619606 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 156384 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 667840 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 784232 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1484344 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1505586 12670625 ~ 12675472 (-) False prr15lb

Expression Profile