RNA id: TU129455


Basic Information

Item Value
RNA id TU129455
length 1475
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G87482
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11271741 ~ 11273302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGACGCTAAAGACAGAGGAACACGAGAGATAaagttaatgtgtgtgtgctttggaGCATTTTGCAGAAAAATGTCTATGAATTGTGACACATTTTACGGTTTATATTTACGCAGctggcagatgcttttaacaaaaaagcCACTTGTTACATTCAATACATTTACAGcagtttgtgttttcttttctttccagtACCTTCCCAGATAGCATCAGAGTGTGGGCCAAGCCTGGCTTACTTTAGGCACTTAATTCTGGCTGTTTTTTCACCGCCTGCTGCTAGTGCTATTCTCTACTGTTTGAGAAACAGAAAAGGGTTAATTCAGTGTGTGGGAATCATGTATGCTTACAATGCGAGGTTTAAAGGGGGGCTTGATCTTCCTCTGCTCCAGCAAGACCCAGTCGATCTCTCTGAAGAAAGGGTGGACTTTGATGGCTTCCTCCAGTCCTTGGGTCACCACACAGCCCAGACGCTTACTGGGGCTCTTCGTCATAAACTGAGAAAAGGAAATACATTCTACATTACACAGTTCACAAAGAAGGGTAAATGTGAACAGCGTTTAAATGGTTACTTTAccctaaaatatttatttttaatcacttaCCCTCAAATCGATCTAAaactatatacacaaatacattttaaaatgtaaagaaggtgtaacaatattaacattacattaaaaagacAATCCCAATGTTGTATAATCAAATCATgataaagtaaatttaaataattagaataaaaaacagaaatcagaAACGCTCTTCGGCTGACAGGTTTTTGGAGAGAGGGGATGAGGATTGAATCAACAGATGGTTTAAATCACTCAGAGGGAAATCTACAAAACTGATACAACCGCTTACAGCAACATTTCAGGCAATTTGGATTTTTAGtacacaaatattataaaaatggaaatgtatgTGCGTGAGTCTTTGAAATGtgccacaaaaaaatgtatttgcaagtCAGAGTTAAATATACCAGAACAGGGGGATGGATGAGGAACAAAAGGGAGGAAAATGAACAGAGGAGGGTTGGAGAGGTCAGAGGGAAAGTGCAGCCAGGTGTATGGCCGTACAGTGGAGCTCAATATATCACTGTAGGAAGAGAAAAGATTTCCGAGcagaaaatggaaaaagataTGAAAAATAGGCCAACCACAAACCACATGCACAAACGAAAATATTGCCGCTTACAGCCTTTAGAATGCTGACGGCTTCTTTACTGAGCCACACGGGATAAAGCACGTCATCGTGGAGGATGGACTCAAAAAGATCGTCCTCGTTGTCAGCTTCAAACGGAGGCTGACCGGCCATCATTTCGTACATGAGAACGCCCAGCGCCCACCAATCCACTGACGGGCCGTACTCCAATTCCTGCAGGATCTGAATGTGACAGACACAAAAACGAGGATCAAAATTAGGTTACATTCTATTTTCACAGTTCACTTCAGACTTACTACTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129411 lncRNA downstream 106702 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA downstream 145462 11124447 ~ 11126279 (-) True G87450
TU129386 lncRNA downstream 199976 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 264803 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 375594 10895841 ~ 10896147 (-) True G87406
TU129457 lncRNA upstream 5022 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA upstream 5022 11278324 ~ 11283586 (-) False G87484
TU129370 lncRNA upstream 39170 11312472 ~ 11315998 (-) True G87417
TU129367 lncRNA upstream 43081 11316383 ~ 11318921 (-) True G87414
TU129509 lncRNA upstream 305886 11579188 ~ 11580353 (-) False LOC122355534
XM_043253246.1 mRNA downstream 52189 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 148903 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 187705 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 216935 11049679 ~ 11054806 (-) True kcng3
XM_043254472.1 mRNA upstream 51099 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 51099 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 71157 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 71157 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 102493 11375795 ~ 11392390 (-) True ldb3b
TU129388 other downstream 225859 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1782429 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1782429 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1782451 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 48121 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 559577 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 675969 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1376081 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1397323 12670625 ~ 12675472 (-) False prr15lb

Expression Profile