RNA id: TU129457


Basic Information

Item Value
RNA id TU129457
length 455
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G87484
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11278324 ~ 11283586 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAGTTGAAGAGTTTGCGAGTGCGCAGGAAGCTTATAGCTAGTCTCATGATGGAGGCTTTGTCCAGGTGGGAGCTGACGCTGTGGGGTAACGGCAGCTGATGGGCCAGCTCATAGAACACCTCTGTCTCTTTACTGCGCCTGCAGCGAGCTGCATCACGGGACTTTTCCTTGCGTCTTTCTGAAGGATGCCTtttttttttctttctcggCTGTCATGATGCGCCTATGCTGAACAACCTTGTCTTGCGTATAACGAATTCACTTAACTTTTCCGcggaaacaaaagaaaaggtttAAACGGGGACTTTCTCAGAAATGcctttatttagttatttctcCTCCGTAATGTCCATGTCTCATGACATTTCCCAGTAATGACCGGAGCAGTTAGTGCAGTCTCAGAACACTGCCGAGGATCGCACTAGCTCTCCAGAGCGACGCTGACTGACCGGA

Function

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129455 lncRNA downstream 5022 11271741 ~ 11273302 (-) True G87482
TU129411 lncRNA downstream 113285 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA downstream 152045 11124447 ~ 11126279 (-) True G87450
TU129386 lncRNA downstream 206559 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 271386 11005008 ~ 11006938 (-) False cript
TU129370 lncRNA upstream 28886 11312472 ~ 11315998 (-) True G87417
TU129367 lncRNA upstream 32797 11316383 ~ 11318921 (-) True G87414
TU129509 lncRNA upstream 295602 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 295635 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 469463 11753049 ~ 11790926 (-) True G87547
XM_043253246.1 mRNA downstream 58772 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 155486 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 194288 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 223518 11049679 ~ 11054806 (-) True kcng3
XM_043254472.1 mRNA upstream 40815 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 40815 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 60873 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 60873 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 92209 11375795 ~ 11392390 (-) True ldb3b
TU129388 other downstream 232442 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1789012 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1789012 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1789034 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 37837 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 549293 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 665685 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1365797 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1387039 12670625 ~ 12675472 (-) False prr15lb

Expression Profile