RNA id: XM_043254038.1


Basic Information

Item Value
RNA id XM_043254038.1
length 2418
RNA type mRNA
GC content 0.39
exon number 2
gene id prr15lb
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12649383 ~ 12675472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcattttaatagtgcaagcttttttttccccctagcaggtctgaaataaaaaaaagaaaagttaaattCTGTTTCAGTATGCAGGCTGTAGCAATTCAACATAAGTAATAATCAATAAGCATGAACTATAAAGCCATTAAACAGACCTGTAGCTGTGGAAAGCACCTGACTCTCCCAGGATTAAACTTTACAGTCATTTTGTGAGTGCAATAAGATCTCCTCTACAGGCATCTACAGTGGCTACAATAAACTAAGTGCAATTAAGGTGAAAGAATAGCAGCTGCTTCGAAAAGTGACTGAATCCTGTCATTATGTAATTGCAGAAGATCAGTGACAAATCCATCGGAGAGTCTCTGTTTACCCATAAAACGACCATATTTCCTTGTGCTATGAATGCCTTCTTATTTTGTAAGCACTGCTACAttaagtgaaaatgttttatgtgttgCATCAaggctgttgtttttgtctctgaACCTTTATGGCAACGGTCTCCTTCAAAGGGACCTCTTTTCTCAAAATGCAGCAGTGTTTTGACTGTATAAGGAGTGCGAGCAAAAAAACTGCGAGAACATTGTTTTACTTCATAAAAATTTTTGCAAAGTTAAATAACTGGAATTTAACACCGATATTTTATCgaggacaaaaatattttcaattgtaatagTATATTTTCAACCCGGACAATGGCAGGTGTTTTCAGATTATTTTTTCCACATTGCATTTTTACTCATCAAATATCGTTCCAAAGCAGTTTTGCAGAGAACAAAACTTACAACCCccaattaaacaatatattatgtTACCAGAAACCAGAAAGTTTAAAGTATATTGGGGCGGCAGCTGCCAAGTAAAGGGCGTGTTTACTAGCACCTTCTAAAGATCACTTCAGATCTTATACTTAAAATCTTATCGTGCACGAATGCTATAAAATCGCTGGACGACCCATCACATGGTCACTGACACATTCCGTTTGGCGACGACTATGACTATGTTGTTAAGCTACCAGATGACACACCTGATTGTGATACCAGCCATACGCATTATTATTACCAGGCGTGTGAGTCTCCAGTGTTTACACTGATTGCTATCACATGGGTAAATCATTGTACAACCTTTGTGATGTGTTCAATAGCAATATACAGCCTGTCCGGCATTACATAACGAACGATACTCTATCTGAGCGGGATGGAATAGTAAGTTATGCATCAAAGAGTTGTTCAAGTGTCTTGGTTCACGCAATGCATATTTTGGTGCATCTCAGATCTCAGGGGAGTGACAGGGGATCCATTGGTGATGTTCATTAATTAAACAGCTGAGCGGCAGAGTCAGGTGTCCTCTTTGTTATTCTAATCTAATCATTGGATGAGGAGACACATATGACCTCACAGAGAAGTAGTTTTGCTGCGTACAATGCGCTACAAGAGGCAAATGAGCCTTTATGGACTGCTTTGCTATCTTCTCCTCGCACCTGTCATGGCCGACCCCGCCTGGTGGAAGCTCACCTTCCTGAGGAAAAAGAAGTCAGAGCCAAAGGTCCTGTATGAAATACCCCCCGACTTTAGTACCAACAATGCGAATAAAGACCTGAGCAACGACGACGCAGACAGCAACTTAGACGCCAGACTGGAAAAAATAGTGGATAAATCTGCCACAAAGGGCCGTCATGTAAAAGTCTCCCATTCCGGGCGGTttaaggagaagaagaagattcGCGCGACTCTCGCGGAAAACCCAAGCCTTTTCCCCGAACCTGCTCGGACTGACAAGAGCcatatggaaaaataataacttcCAGACCGTTTGAGGCTTGTTTATACATACAAACTCATTTTTAGTCATTCTTATTTGTAAGGCTGCTTGTTGGGTTACCACTGACGCAGCTGGAAcagaaaattgttttttttatcggccatactttaatttaaaagccaCCCCAAGATGATTATTAAGGAGTTAATGTTTCCTGTAAATCATAAACACAATATTGCCATGCTCATAAAATGCCTTATTATCTTTGTGGGAAAAACCTGACAAGAAAGGTACAGAAACCTGAACTCATTCAACTCTCGTTTATAATTATCACACAATCcgttaatttttacatttaaagtggagGATGGtcataaaatgtgtgttattgtgtAATAACCAATCTCAAACCTGTGGGAAACAGCAATTTGATTGCCCGTTGATCacgcgtttttgtttttttgtgattgtGCATATCTCGATTTTATCATTTGTTATAAAGTGTTTCAATTAGGGCAAGGGCGGTCAAAAATCACAGCACGTTAGAGATAGGTTCTCCACAACTACAACTTTCCTTTGTCTCGTTTAATTTGTACTTATCTATTGTTTACTGCAGTCTTGAAAggttattgttaaaatatgcaaaataaagatttttattgcGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252231.1 lncRNA downstream 32695 12613150 ~ 12638736 (-) True LOC122355629
TU129849 lncRNA downstream 184036 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 324365 12344898 ~ 12347066 (-) True G87695
TU129706 lncRNA downstream 518694 12152240 ~ 12152737 (-) True G87660
TU129705 lncRNA downstream 519796 12151299 ~ 12151635 (-) True G87659
TU130017 lncRNA upstream 130701 12804696 ~ 12807646 (-) True G87860
TU130240 lncRNA upstream 691958 13365953 ~ 13368320 (-) True G88003
TU130253 lncRNA upstream 755411 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 759899 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 784461 13458456 ~ 13459865 (-) True G88034
XM_043254037.1 mRNA downstream 3452 12666115 ~ 12667979 (-) True mrpl10
XM_043254132.1 mRNA downstream 6394 12654000 ~ 12665037 (-) True osbpl7
XM_043254033.1 mRNA downstream 107392 12556682 ~ 12564039 (-) True pdk2a
XM_043254207.1 mRNA downstream 118716 12549656 ~ 12552715 (-) True LOC122355678
XM_043254206.1 mRNA downstream 122502 12488769 ~ 12548929 (-) True myo1d
XM_043253089.1 mRNA upstream 11117 12685112 ~ 12689248 (-) True si:ch211-194k22.8
XM_043253607.1 mRNA upstream 27253 12701248 ~ 12708174 (-) False cbx1b
XM_043253604.1 mRNA upstream 27253 12701248 ~ 12708038 (-) False cbx1b
XM_043253605.1 mRNA upstream 27253 12701248 ~ 12707851 (-) True cbx1b
XM_043253216.1 mRNA upstream 40256 12714251 ~ 12717184 (-) True ccdc189
TU129639 other downstream 720276 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 835819 11832879 ~ 11835612 (-) True G87569
TU129464 other downstream 1348828 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 1625549 11042888 ~ 11045882 (-) True LOC122355648
XR_006252199.1 other downstream 3182119 9484946 ~ 9489312 (-) False ormdl3
TU130001 other upstream 77909 12751904 ~ 12752678 (-) True G87845
XR_006252221.1 other upstream 937739 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 937739 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 937741 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 940152 13614147 ~ 13691338 (-) False tcf7l2

Expression Profile