RNA id: TU129966



Basic Information


Item Value
RNA id TU129966
length 1085
RNA type TUCP
GC content 0.36
exon number 6
gene id gall
representative False

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12760374 ~ 12762731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GACAGACTGTCCctcattcagacacacacacctgcagcaaACCTGTTGTTTGAAGGTTACAGACTCTCTTTTTTCTGGAATCCTgggtttttataaatatttataaacagcAACTGTTCTCTTATAAGATGCAGATGAGTTGTTCTTTACTCTTCATCTCACTCTGTGTCCTCACTGCACATCTGTCAAGGATCCAGGGCATGACCCTCACGAATCCAGAGAAAAAGGGATGGACTTTGAACAGTGCTGGATATCTACTGGGACCTTATGCTCACAGAAGTCTTAATGTAAGACACAGAGCTATGGGCAAAAGAGACATGTGGAATGAAAGTTCAAGCTTACCAGCATCTTCATACAATGATTCCTATCTTCTTTCACTGCTGGGGCATCTTGCATATCTGCGATTAAAAGAAATGGGAATGACTGAAGATTTCAGTGGCTCTTTAATGAGTGGCCATATGAAGCAATAACAAAATATctctgttttactgttttttaacaGTTGCCCTCTAATAGCGTTTTGCATTTGAtccttttattcattatttaaaatgtattaacatgtaGTTCACATTGGTACAATGCGTAGATTGATATCCCATGAATCATGCTGGTTTGCCTCATCTCTCCACTTTATTATTCAACAATTGTTGGTGCATAATTTTCTGCTTCAGAGTTCAAATAAAGCACTTcatgacaaatgtttaaaaaaaaaaaacgtttattcaatataaaaagGAAATTGAGGTAATCAGGGTGTAGCAATTTGTGAAAAATTGGTGATTTCACCATTGCCATTTACaagtacacatttaaataaatatgaaaataataacctGTGGACtccaaaagcatttttgcatgACTAACAGAGTAacagaataatttaaaaaatgtaacccaAAGCGGTGGGAGTGCATGTGCATAGTAgtgtaacaaaataaatttcttCTTGATTACTAGTCTACTGCATCCAGAGCGCTCAAGATGTTTTACGACATCCTTCCATCTGATGTCAAATATGCAATACTATCAAAGATTGTCTTTCATATTATATAAGGAGGAGCAAAGATTTAACATATGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129858 lncRNA upstream 201642 12556682 ~ 12558732 (+) True G87753
TU129812 lncRNA upstream 282465 12476805 ~ 12477909 (+) True G87718
TU129739 lncRNA upstream 520173 12239783 ~ 12240201 (+) True G87669
TU129711 lncRNA upstream 601866 12158246 ~ 12158508 (+) True G87665
TU129710 lncRNA upstream 602559 12157586 ~ 12157815 (+) True G87664
TU130050 lncRNA downstream 137799 12900072 ~ 12900399 (+) True G87891
TU130099 lncRNA downstream 433711 13195984 ~ 13197074 (+) True G87934
TU130188 lncRNA downstream 586676 13348949 ~ 13383848 (+) True G87979
TU130193 lncRNA downstream 598041 13360314 ~ 13361050 (+) True G87981
TU130250 lncRNA downstream 667140 13429413 ~ 13431559 (+) True G88010
XM_043253571.1 mRNA upstream 8642 12750626 ~ 12751732 (+) True gjz1
XM_043253570.1 mRNA upstream 10368 12746551 ~ 12750006 (+) True znf668
XM_043253213.1 mRNA upstream 29446 12717290 ~ 12730928 (+) False rnf40
XM_043253214.1 mRNA upstream 29446 12717420 ~ 12730928 (+) True rnf40
XM_043253215.1 mRNA upstream 45702 12709411 ~ 12714672 (+) True phkg2
XM_043254110.1 mRNA downstream 3852 12766125 ~ 12773695 (+) True valopb
XM_043254482.1 mRNA downstream 29016 12791289 ~ 12812984 (+) True gabrz
XM_043254483.1 mRNA downstream 41471 12803744 ~ 12812984 (+) False gabrz
XM_043254460.1 mRNA downstream 52918 12815191 ~ 12841965 (+) False adgra1a
XM_043254462.1 mRNA downstream 64738 12827011 ~ 12841965 (+) True adgra1a
TU129954 other upstream 22725 12732764 ~ 12737649 (+) True G87817
XR_006252241.1 other upstream 815519 11936842 ~ 11944855 (+) False nbr1a
TU129235 other upstream 1058719 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 1676004 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 2178619 10542229 ~ 10581755 (+) False svila
TU130259 other downstream 679670 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 833521 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 1100818 13863091 ~ 13863702 (+) False gucy2g
XR_006252211.1 other downstream 1132088 13894361 ~ 13904627 (+) True LOC122355339
XR_006252175.1 other downstream 1215907 13978180 ~ 13990754 (+) False rnf157

Expression Profile