RNA id: XM_043254359.1


Basic Information

Item Value
RNA id XM_043254359.1
length 2520
RNA type mRNA
GC content 0.39
exon number 21
gene id LOC122355808
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13424308 ~ 13432195 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTGTCTAAACTTCCTCATACATTTTAACCACATATTGTGTTCTTACTGACGGTGAGCATCTATATCAGTTTTCAGGCTCACACTGACAGCATCCCATTACTCATCACCACCAGGAAAAATGgcagATAATAACTATGCATTTAACATACATGGAGCAGAGGAACAAATGTGTTCTGGATACCTTTACAAATCTCCCCCAGAAAATCAGTTCAAGTCCCAGaaatcaTGGAAACGGAGgttttttgttcttctgaaGTACAGTGACAACAAATGCCAACTTAAGTACTATAAGAATGAAGAGAAGAACAAACCACTAGGAGACATTGACTTGTCCAATGTCACATACATGTTCTTGTACCCCGAGATGCATGCAATGTGGAAATGGATTCATAACAATTTCAGATGTTCTTCTTCATGTGTAATGTTTATTAGAGTACCAGAGAGAGAGTACTTCCTTATAGGAGAAAACAGTTGGGAGATGGACAAATGGTTTACTGCTTTATATGACATCTTAAATAATCGTCCACACAGACTGCTGGATCGCAAGACATTTGGGTCAAAGAGACAGATCAGTGAACCTCCGCGATCAGAAAATGACAATAAGCAGAAAACTGAGTGGGGTCAAACAAAACCTGTGCATGAGCTAACATCATCTGTGACCCATGAACCCATCTATGTGTCTCCAATGAAATTCATTAAGACTGAACAAACAGAAATTAATCATGAAAATGATGACACTGATGATCTGTCAGAAAACAACATTAGGATGTCCACTAACAAAAAGAAACCAGCAGCAACTTCAACATTTTACAATGAACCAGTGATGGTGGAGGAACTGTACACTGGATATCTGCTCAAGTCCCCGGCTCAATCAGCCCTGTCCAAAAACACGAAATCATGGAAGCGTCGTTTCTTTGTGCTCTCCAAGACCACTGAAGACTCCTACCAGCTGACATACCATGTAAACAACGAAAGAAAAGAGATTGACCTTTCTAAgaTCAGCCTGCTGTTCACTGGCCCTGAGACACATCAGAAGTGGGACTGGATCCAGAAAAACTTCAAGTGCTCTCCATCCTCTGTGCTGTTCTTGAAGGTGGAAGACGATGCACCAAAACACTCGAGAGAATATTTCCTCATTGGAGAAAACAGTGCTGATGTGGAGGGTTGGCTCAGTGCCTTAGTCAAGGTAATAAAGACCCAGAAATCACAATATGCCCTTCagGAAAACAGATTTCGATCAGCATCTGAACCTGTTCAGAATCCAGAAGAAAAAGCTGAGGATGAGTCTGATGACAGACGGTCAGCGCCTGAATTGATGCTAACTTACCCGTCACCATACAGCCATTATGACTATCCTCGCAAGCTCAGTGAACCTCCACTACCAGTAGAGCTAAAGCAGACTCCAGTTACTGAGAATGAAAATGAGGAAGACGAGATGCAGGACAATTCTGCAGAGGACAATGAATACATGTCCATGGCATCATTGCAAAGTGCTTTGGAAGAAGACCAACAGGAGACAGACAATACATGCATGCAGAAAAATCACAAGTCCTCTGTGTGCAGTGGTGCAATCGAtcaggatgaggatgatgactGTAATTGGAAAATGCACGTACATGTTGAGAAGGAGATCTGCGTTAGtcaaaatgatctaaaaaataGTCTCATATTGACTCAGGCAGAAGGCAAACCATGTGTCTCTGACTGTCGGATGCTTCAGGACTCGTGTCTCTTTCATAAGGGGGATCAGATCCTTGCCTTCAATGACCTGCTTATAGACACAGTAGAAGAGATTCAGACATATGTAAGAAGACTAAGCAAGGATGAGGTAAAACTCACTATTCGGCGGCTCATAGGATCTCAGCCTCTGCACAGCGAACCCTGCCTTTCATAATGAAGACAAATCTCATGTGAATTCATCAACATCAAGAttgtaaatatgtatgaaaagctcatttatttgagtttaatcATACAGACGGAAAACAAGGTGTAAACGGAAAAATAAAAGAGCCAGTCAGGTTATCCTCTTTTGACTGTATGTTAATCATGTAATATGTAAAAGAGGGTAAATGTTAAATTCATTGACCTTAAAATGTCACTGAGTAAAAAGATACGTATTTACATGAAACTATAAATGGTCGTGGGAATATTAGTTCACATCTGTGAAACACAAGAGTcacattttactttataataagtATGAAGGTTTATTCATattgaaaaatgcagttttgaatGGCTCATGGTATTTCAACCTCTTTAAAGATGCACTTTTTTACTATCCTAACAGTATGAGGTActttatatactgtgtatatacaaGGTTTCTGTCgtgtattttgttttgcaaagcATTTAACCAATGATGTATTGCTCCTAGTCATTATGCATTGattcaaatgttttagttgCTCTTTAGATAGCCTACATAAtggatatatatgtattatgctGTAGATAAGCATGTATCTGCACATTGTTCCAATGTGGAGCATTATTAaacttttgaaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130240 lncRNA downstream 55988 13365953 ~ 13368320 (-) True G88003
TU130017 lncRNA downstream 616662 12804696 ~ 12807646 (-) True G87860
XR_006252231.1 lncRNA downstream 785572 12613150 ~ 12638736 (-) True LOC122355629
TU129849 lncRNA downstream 936913 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 1077242 12344898 ~ 12347066 (-) True G87695
TU130263 lncRNA upstream 1832 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 26394 13458456 ~ 13459865 (-) True G88034
TU130281 lncRNA upstream 28083 13460145 ~ 13461245 (-) True G88035
TU130329 lncRNA upstream 106629 13538691 ~ 13539383 (-) False entpd1
XR_006252233.1 lncRNA upstream 276993 13709055 ~ 13712541 (-) True LOC122355666
XM_043253053.1 mRNA downstream 1350 13418717 ~ 13422958 (-) True LOC122355076
XM_043253054.1 mRNA downstream 1684 13418717 ~ 13422624 (-) False LOC122355076
XM_043254219.1 mRNA downstream 6052 13414181 ~ 13418256 (-) False LOC122355682
XM_043254220.1 mRNA downstream 6093 13414181 ~ 13418215 (-) True LOC122355682
XM_043254221.1 mRNA downstream 6115 13414181 ~ 13418193 (-) False LOC122355682
XM_043254186.1 mRNA upstream 4845 13436907 ~ 13444732 (-) False casp7
XM_043254187.1 mRNA upstream 4845 13436907 ~ 13444729 (-) True casp7
XM_043254188.1 mRNA upstream 4845 13436907 ~ 13444727 (-) False casp7
XM_043253502.1 mRNA upstream 91606 13523668 ~ 13540301 (-) True entpd1
XM_043253501.1 mRNA upstream 91606 13523668 ~ 13529991 (-) False entpd1
TU130001 other downstream 671630 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 748836 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 748836 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1473153 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1588696 11832879 ~ 11835612 (-) True G87569
XR_006252221.1 other upstream 179672 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 179672 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 179674 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 182085 13614147 ~ 13691338 (-) False tcf7l2
XR_006252179.1 other upstream 540820 13972882 ~ 13976511 (-) False srsf2a

Expression Profile